Query= MSMg01no511_k24.b1 MSMg01no511_k24.b1 CHROMAT_FILE:
MSMg01no511_k24.b1 PHD_FILE: MSMg01no511_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:37 2005
(339 letters)
>mm_chr19_55487964_55488702
Length = 739
Score = 547 bits (283), Expect = e-160
Identities = 306/321 (95%), Gaps = 12/321 (3%)
Strand = Plus / Plus
Query: 1 gtaattatcaagttcgtatctgagatagcagaagagatcttatttagccctcctatcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaattatcaagttcgtatctgagatagcagaagagatcttatttagccctcctatcacc 260
Query: 61 tggaccgtaaatcggcaggcatctgtttagtcagcaaaatgcattgttaaattagaatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaccgtaaatcggcaggcatctgtttagtcagcaaaatgcattgttaaattagaatga 320
Query: 121 tttcatgactaaaatttgtaagtgtttatgtttggaatttttaaggaaattctacctgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcatgactaaaatttgtaagtgtttatgtttggaatttttaaggaaattctacctgaa 380
Query: 181 cggtatcatgaacaccaatgttgcatgctaatctaatacacataagctattaaagaatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cggtatcatgaacaccaatgttgcatgctaatctaatacacataagctattaaagaatat 440
Query: 241 tagccagaaaacagtatgcctctgtacgcgcgcgcgcgcgtgtgcgtgtgtgtgtgtgtg 300
|||||||||||||||||||||| ||||| |||| |||||||||||||||
Sbjct: 441 tagccagaaaacagtatgcctccgtacg------------tgtgtgtgtgtgtgtgtgtg 488
Query: 301 tgtgtgtgtgtgtgtgtgtgt 321
||||||||||||||| |||||
Sbjct: 489 tgtgtgtgtgtgtgtttgtgt 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_k24.g1 MSMg01no511_k24.g1 CHROMAT_FILE:
MSMg01no511_k24.g1 PHD_FILE: MSMg01no511_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:37 2005
(559 letters)
>mm_chr19_55565539_55566496
Length = 958
Score = 1013 bits (524), Expect = 0.0
Identities = 553/566 (97%), Gaps = 9/566 (1%)
Strand = Plus / Minus
Query: 1 acccaacatgtgtttacttagtgtgttcagtgtcatccagctttccagggtgaatgaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 acccaacatgtgtttacttagtgtgttcagtgtcatccagctttccagggtgaatgaatt 651
Query: 61 actcattctaaaaacaaaa------aagaagaagaagaaaaaaaaaaacccacccaacaa 114
||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 650 actcattctaaaaacaaaaaagaagaagaagaagaagaaaaaaaaaaacccacccaacaa 591
Query: 115 accccaatagaccagaacaaaacaaaaaaccctagagagctgcgaaagtacctgacaatt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 accccaatagaccagaacaaaacaaaaaaccctagagagctgcgaaagtacctgacaatt 531
Query: 175 gactgcaaagtaattagaaggcctttttagagatcactgtgggctgagtcaatcacttcc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gactgcaaagtaattagaaggcctttttagagatcactgtgggctgagtcaatcacttcc 471
Query: 235 tgtactccagtgacccctgaacacatttctgccactgcttacgtccgagtctaaccatct 294
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tgtactccagtgacccc-gaacacatttctgccactgcttacgtccgagtctaaccatct 412
Query: 295 gtttactcaagaagtggctgccccgctagcacacgttttctttttaaatcaaatagcagt 354
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 411 gtttactcaagaagtggctgccccgcgagcacacgctttctttttaaatcaaatagcagt 352
Query: 355 ttaagcatttttccaactgactggtgctacaacaaggcatgtgcgagtctgtgtgtatga 414
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 351 ttaagcatttttccaactgactggtgctacaacaaggcatgtgtgagtctgtgtgtatga 292
Query: 415 aggagcatgcacatcccacagcaggtatgcagaggtcagagggcaacctccggcaggcat 474
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 291 aggagcatgcacatcccacagcaggtatgcagaggtcagagggcaatctccggcaggcat 232
Query: 475 cagctctcaccttccaca-ttgcttgacacagggtctctgctttgccactgtgcacgtca 533
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 231 cagctctcaccttccacactt-cttgacacagggtctctgctttgccactgtgcacgtca 173
Query: 534 aactagctagtcctgagctggagggt 559
||||||||||||||||||||||||||
Sbjct: 172 aactagctagtcctgagctggagggt 147
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 958
Length adjustment: 10
Effective length of query: 549
Effective length of database: 948
Effective search space: 520452
Effective search space used: 520452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
