BAC Information

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BAC

Clone NameMSMg01-511N11
Chromosome19 (Build37)
Map Location 29,375,298 - 29,375,863
singlet/doubletsinglet
Overlap geneJak2
Upstream geneGlis3, EG434460, EG627788, Slc1a1, LOC545262, 4430402I18Rik, Ppapdc2, LOC100042006, EG226086, Cdc37l1, LOC672214, Ak3, Rcl1, LOC433238
Downstream geneInsl6, Rln1, 5033414D02Rik, Cd274, Pdcd1lg2, C030046E11Rik, D19Wsu12e, Mlana, 9930021J03Rik, Ranbp6, Il33, Trpd52l3, Uhrf2, Gldc, EG625917, Mbl2, LOC100042088
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511N11.T7 (MSMg01no511_n11.b1)MSMg01-511N11.TJ (MSMg01no511_n11.g1)
ACCAG584942AG584943
length719731
length of high quality
(start - end)
558 (48 - 605)570 (77 - 646)
definitionCHROMAT_FILE: MSMg01no511_n11.b1 PHD_FILE: MSMg01no511_n11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:48 2005CHROMAT_FILE: MSMg01no511_n11.g1 PHD_FILE: MSMg01no511_n11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGTCTATTGCCTGTGTGACCCAGTTCCAGGCCCAACTCCTGGC
CCACCCTCGAGTCCAGTTTTAAAACCCCACCACTGCCTATCCTGCTGCCC
TCTTTCCTGCTGACAACCCAGAAGTGCTCATCCGTGACTGTCAGGAGATG
AAAGATGACAACAGGTATGTGGGAGCTGCTGTGGTTACTTTAACGGAAAG
GATTTGGGTCCAAATTTGGTGCCTCAGTCAAGAGAGCAGAATAGATCTGA
CCCAGACTCTCAGATGGGGAAAGTCCACTACCATATACACCAGCAGTTGC
TATACGTTTATTAGCAGACACGTCCATGGCATGATCTGTAGAGAAAGAGG
GTTTTTTGGTGTTGGGGAAAAGAACACTAGAAAATCTTTGTCCTCCTAGG
GGCTATTTGGCTTCCTCCATGAACTGCTGTTCTCCTGCCTGCCTGCTGAC
CTGGCTACCAGACAAATGGCCCTAAGACCAATGGGTCTATGGGTATTCTG
ATGGTGTACCCTGACCTGGTACTGGCTGAGAATCCATGAGAGAAATGGAC
AGCTTAAACACACAGGTTGACGGAGGACTCCAGAAAGAAAGACTGTTCTC
TCAGAAACAACAGGCATGATTCTGGCAACTGACCTTTACCAGGCTACTCA
TTTGGTGTCCACCAAACTT
TCCATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTACTGATTCTAGCAGCCAGC
ATTTTCTGCATATTTAGAAATTAATATCAAGTTGTCTTGGAAACGCTTGG
CTTCCACCCTAATGGCTGTGTTGTTAGGGTAACTTCGGGAGTGTGGAGAT
GTGCCGCTATGACCCGCTGCAGGACAACACTGGCGAGGTGGTCGCTGTGA
AGAAACTCCAGCACAGCACTGAATAGCACCTCCGAGACTTTGAGAGGGAG
ATCGAGATCCTGAAATCCTTGCAGCATGACAACATCGTCAAGTACAAGGG
AGTGTGCTACAGTGCGGGTATGTTGCCAGGCACACTTGTCTGAACTTGAC
AGCGTGTCTTTGTCATCCAGCTAGTATATTAGTCAGTGCCCGAGAGCGAG
TGAGCCTTGGAGATTGTGCAGGGAGATCTGGGGCTGTAACTACAACAGTA
TTTCCGCTGGTTGGTTAATCATCCTTCTCACCACTCCCTTAAGGAAGAAG
TGTTAACTTTTTTAACAAAATTAATTTCCTTTTATAATCTATTAAAATGT
TTTTATATTAGATACTTCTTATAATTGAAAAAATTCCTTAATCACTTATT
TAGATTTGTAAAAATAATTAAAGGAGGTTTAAGAATATTTATAAAGCTTC
TTTAAAAATTTGGATTGAAACCTGTATTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_n11.g1 MSMg01no511_n11.g1 CHROMAT_FILE:
MSMg01no511_n11.g1 PHD_FILE: MSMg01no511_n11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:49 2005
         (570 letters)



>mm_chr19_29375098_29376068
          Length = 971

 Score = 1064 bits (550), Expect = 0.0
 Identities = 562/566 (99%), Gaps = 1/566 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctactgattctagcagccagcattttctgcatatttagaaattaatatcaagttgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctactgattctagcagccagcattttctgcatatttagaaattaatatcaagttgtc 260

                                                                       
Query: 61  ttggaaacgcttggcttccaccctaatggctgtgttgttagggtaacttcgggagtgtgg 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggaaacgtttggcttccaccctaatggctgtgttgttagggtaacttcgggagtgtgg 320

                                                                       
Query: 121 agatgtgccgctatgacccgctgcaggacaacactggcgaggtggtcgctgtgaagaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatgtgccgctatgacccgctgcaggacaacactggcgaggtggtcgctgtgaagaaac 380

                                                                       
Query: 181 tccagcacagcactgaatagcacctccgagactttgagagggagatcgagatcctgaaat 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccagcacagcactgaagagcacctccgagactttgagagggagatcgagatcctgaaat 440

                                                                       
Query: 241 ccttgcagcatgacaacatcgtcaagtacaagggagtgtgctacagtgcgggtatgttgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttgcagcatgacaacatcgtcaagtacaagggagtgtgctacagtgcgggtatgttgc 500

                                                                       
Query: 301 caggcacacttgtctgaacttgacagcgtgtctttgtcatccagctagtatattagtcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggcacacttgtctgaacttgacagcgtgtctttgtcatccagctagtatattagtcag 560

                                                                       
Query: 361 tgcccgagagcgagtgagccttggagattgtgcagggagatctggggctgtaactacaac 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcccgagagcgagcgagccttggagattgtgcagggagatctggggctgtaactacaac 620

                                                                       
Query: 421 agtatttccgctggttggttaatcatccttctcaccactcccttaaggaagaagtgttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtatttccgctggttggttaatcatccttctcaccactcccttaaggaagaagtgttaa 680

                                                                       
Query: 481 cttttttaacaaaattaatttccttttataatctattaaaatgtttttatattagatact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttttttaacaaaattaatttccttttataatctattaaaatgtttttatattagatact 740

                                     
Query: 541 tcttataattgaaaaaa-ttccttaa 565
           ||||||||||||||||| ||||||||
Sbjct: 741 tcttataattgaaaaaaattccttaa 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 971
Length adjustment: 10
Effective length of query: 560
Effective length of database: 961
Effective search space:   538160
Effective search space used:   538160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)