BAC Information

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BAC

Clone NameMSMg01-512B23
Chromosome19 (Build37)
Map Location 10,628,427 - 10,629,019
singlet/doubletsinglet
Overlap gene2810441K11Rik
Upstream geneLOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik
Downstream geneTmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512B23.T7 (MSMg01no512_b23.b1)MSMg01-512B23.TJ (MSMg01no512_b23.g1)
ACCAG585156AG585157
length764766
length of high quality
(start - end)
596 (37 - 632)516 (68 - 583)
definitionCHROMAT_FILE: MSMg01no512_b23.b1 PHD_FILE: MSMg01no512_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:10 2005CHROMAT_FILE: MSMg01no512_b23.g1 PHD_FILE: MSMg01no512_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTA
TGTGTAATTGAATGCATAGCCATCCCCTTGTCTCTGCCTGTGGGTACTGG
GATTAAAGGCATGTGCCACCATGCTCACCTTAGCAAGGTTTTTGGTCCTC
TATAATTACTTTTGTGAATTGACTGTTAGTATCCCTTACCATTCTCTCCC
TTGGGTTTGTATTTTCACACTAGGATGATATGTTCTAAGTAATCAGCAGT
TTTGCTCTGTTCTCTGGTGTCTAGAAACTTCTTGAGAAATCCTTGTTTAG
AGAAGCGGAGGGGATCTCGAGCTCTTTAGGAATGTACTGCTTTCCTCTCT
CAGAGCAAGGAGAAGACGCAGGCACTCTTGTGGCACTCAGGCAGCTGGGA
GGACTGGTCTAAGATCAGTGCTACTGCCCGCTTCTAGCCTCACTCACAAA
CACACAGGTAAACCTTGACCTAGAATATGAAGCGGCAGCTTGAAGCCTCA
GGGAAGAAGCAATGGTATATACATTACCAGATCCACTCTGATAGTGAGCC
TAGGTTCTTTGTCTTGTTAATCAAGTTACAGGCTCCAGCATGTCTCATAA
GCAATGGAAATATTTTCTGAACAACACTCACCGAAAAACAATCGTATGAC
TTCAATGCCAAGATAGAGCAGCAGCATCACCACATCCAGGACTAAGTTGG
CTGTTGGGTACGGCAACAGGAGCCCTACAGGAGGGAAAAGCAGAGTATGC
ACATACCACCTAGC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTGAACTCCAAGCCAGTCTGGGCTACACAGGG
AGACCTTGTTTCAAAACCAAAACAAAATGTTGTTCTTCTCTGGGCATCAC
AGTTCACACATGTTGTCTCTGAGCTTCATCCGTGTAAGACTGTTGGACTC
TGGCTGCCTGATATATGTACTTCATTCCATGTCACTCTCCAGTTCACAGA
CATGTGGAAGCAGCTGCCTTTTGACTATCATAAACAGCGCTGCTGTGTTC
ATACACAAATGGCTGTCCGAGTTCCTGTTTTCATTTCTTCTATGCAGATA
CAGAAACAGAACTGCTGTGTCATACAGTAAGTGACCTGTTGTGGGATCAC
TGTGCTGCCTCCTACAGTGGGCAAACCACTTCACATTCCACAAAAAACAT
ACACGCCTTCACTTCTCCACATTCTCATTAACACTTACTTCCTATTTTTA
CTCAGTGTGTGACTCATGTGCATGTTTGTGGTGACTGTGATGTATATTCT
TATTGGTGTGTATATATGTATGTGTGAGTGTATGGNATATGTAATGNATA
NTCNNANNANNNTNNNNNNNTNNNTTTTNTTTATAATTTTTTATTTATTA
TTATTAATTATANATTTTATTTATTTATTTTTTTAATTTATTTTTATATT
TATATTTATANATTTTTTTTTATATATTTTTTTTATTTANATTTTTTTTT
TAATTTTTATTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_b23.b1 MSMg01no512_b23.b1 CHROMAT_FILE:
MSMg01no512_b23.b1 PHD_FILE: MSMg01no512_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:10 2005
         (596 letters)



>mm_chr19_10628224_10629219
          Length = 996

 Score = 1069 bits (553), Expect = 0.0
 Identities = 583/593 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattatgtgtaattgaatgcatagccatccccttgtctctgcctgtgggtactg 63
           |||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 204 ggaattcattatgtctaattgaatgcatagccatccccttgtctctgccagagggtactg 263

                                                                       
Query: 64  ggattaaaggcatgtgccaccatgctcaccttagcaaggtttttggtcctctataattac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 264 ggattaaaggcatgtgccaccatgctcaccttagcaaggtttttggtcctctataatgac 323

                                                                       
Query: 124 ttttgtgaattgactgttagtatcccttaccattctctcccttgggtttgtattttcaca 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 324 ttttgtgaattgactgttagtatcccttaccattctctcccttaggtttgtattttcgca 383

                                                                       
Query: 184 ctaggatgatatgttctaagtaatcagcagttttgctctgttctctggtgtctagaaact 243
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 384 ctaggatgatatattctaagtaatcagcagttttgctctgttctctggtgtctaggaact 443

                                                                       
Query: 244 tcttgagaaatccttgtttagagaagcggaggggatctcgagctctttaggaatgtactg 303
           ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 tctagagaaatccttgtttagagaagcggaggggatcttgagctctttaggaatgtactg 503

                                                                       
Query: 304 ctttcctctctcagagcaaggagaagacgcaggcactcttgtggcactcaggcagctggg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctttcctctctcagagcaaggagaagacgcaggcactcttgtggcactcaggcagctggg 563

                                                                       
Query: 364 aggactggtctaagatcagtgctactgcccgcttctagcctcactcacaaacacacaggt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aggactggtctaagatcagtgctactgcccgcttctagcctcactcacaaacacacaggt 623

                                                                       
Query: 424 aaaccttgacctagaatatgaagcggcagcttgaagcctcagggaagaagcaatggtata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaccttgacctagaatatgaagcggcagcttgaagcctcagggaagaagcaatggtata 683

                                                                       
Query: 484 tacattaccagatccactctgatagtgagcctaggttctttgtcttgttaatcaagttac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tacattaccagatccactctgatagtgagcctaggttctttgtcttgttaatcaagttac 743

                                                                
Query: 544 aggctccagcatgtctcataagcaatggaaatattttctgaacaacactcacc 596
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aggctccagcatgtctcataagcaatggaaatattttctgaacaacactcacc 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)