BAC Information

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BAC

Clone NameMSMg01-512D23
Chromosome19 (Build37)
Map Location 10,628,427 - 10,629,040
singlet/doubletsinglet
Overlap gene2810441K11Rik
Upstream geneLOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik
Downstream geneTmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512D23.T7 (MSMg01no512_d23.b1)MSMg01-512D23.TJ (MSMg01no512_d23.g1)
ACCAG585252AG585253
length7691,112
length of high quality
(start - end)		617 (36 - 652)---
definitionCHROMAT_FILE: MSMg01no512_d23.b1 PHD_FILE: MSMg01no512_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:20 2005CHROMAT_FILE: MSMg01no512_d23.g1 PHD_FILE: MSMg01no512_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTAT
GTGTAATTGAATGCATAGCCATCCCCTTGTCTCTGCCTGTGGGTACTGGG
ATTAAAGGCATGTGCCACCATGCTCACCTTAGCAAGGTTTTTGGTCCTCT
ATAATTACTTTTGTGAATTGACTGTTAGTATCCCTTACCATTCTCTCCCT
TGGGTTTGTATTTTCACACTAGGATGATATGTTCTAAGTAATCAGCAGTT
TTGCTCTGTTCTCTGGTGTCTAGAAACTTCTTGAGAAATCCTTGTTTAGA
GAAGCGGAGGGGATCTCGAGCTCTTTAGGAATGTACTGCTTTCCTCTCTC
AGAGCAAGGAGAAGACGCAGGCACTCTTGTGGCACTCAGGCAGCTGGGAG
GACTGGTCTAAGATCAGTGCTACTGCCCGCTTCTAGCCTCACTCACAAAC
ACACAGGTAAACCTTGACCTAGAATATGAAGCGGCAGCTTGAAGCCTCAG
GGAAGAAGCAATGGTATATACATTACCAGATCCACTCTGATAGTGAGCCT
AGGTTCTTTGTCTTGTTAATCAAGTTACAGGCTCCAGCATGTCTCATAAG
CAATGGAAATATTTTCTGAACAACACTCACCGAAAAACAATCGTATGACT
TCTATGCCAAGATAGAGCAGCAGCATCACCACATCCAGGACTAGGTTGGC
TGTTGGGTACGGCAACAGGAGCCCTACAGGAGGGAAAGCCAGAGTATGCA
CATACCACCTAGCTAACGG

TGGCTGGCTCCGTAAATTTTTTCTCATCCTATTACACTCCCTCCTCTTTA
ATTCTCGGCACTTCTAGTACTTTTGTATTACTCTTCCTCTCCCGCCTCGC
TTTCGTTTTTCCCCTCGGACTCATTGGTGCTCGAGTTATGGTGTTGGGTC
CTGTTCTTGTCTCTTTCTCCTACAAAAAGAAGGGATGGTACATCCTAATC
CCGCATTAGGTATTTTCTGCCGGGTGAAAACTGCGAGGTGTAGAGCTTCA
TATTAGGTTCTATGTTTCTCGGGTGGCCTCATCACCTAGTGGGATAGTAC
CCGTCTTGGTTTCTTCAAAGAAACTCATATAAACCAATAAATAGGCTTCG
CGTTTCTATCTCTCTCTGGGGGCAACCCTAATATGGTCTCCAACATACCT
ATGTTATGGTGCATCTCTGGAAGTCNTTCACCTCTCCCGGGGGTAAAAGA
AACTTGGGTTGGTGGAACTCTTTTGGGTCTCGCCCCGAGAATACATTAAT
CTATTACTCTCATACCATGTTCCCAGGGGGTGAACGTCTCTCCTCGCGGG
GTTCACAATAAGAAGTGTGTGGGTAATAAACAACACTTCTCTCTTTTATT
TGATCACACATAACACAAAAAATAACACACACTCTCTGGCGTTGCATGTT
GTGTTCAACACTATAAACCACAAACATATGCGCGGTATTTCTCCACACTA
CAGTCCCTCTCGCGGTTGTTTATTTCCTCGTTCCTTCCTTCCTTAGCGTC
TTGCACATTATCCATGAACATAAAATATAAAATCTCACACACTTGGAGTG
TGCTGCGTCATTCTTCACTACGTCATTCCTCTGTCCCAGCGACGCCTCTA
TTTTCCGCGTCTACGANGTTTCACCACAATCACCTACTGTGTTGGGTGTG
TGCTTCGCGCTTCTCATAACATTGTCGTTGCGCGCGCGGCGANGCCGATA
CTAGAGTCATCATTGTANCTTGCTTTGTTCTCTTTATTTCAATACTCTCT
CATATCGATAACACACCATATTATATATCTTCGTGTCTTCCGCTTCGTAT
CTATTCCTATGTCCGGCTNTATTCTAATTATATCTCAACCATTATATACN
CACTCTACTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_d23.b1 MSMg01no512_d23.b1 CHROMAT_FILE:
MSMg01no512_d23.b1 PHD_FILE: MSMg01no512_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:20 2005
         (617 letters)



>mm_chr19_10628224_10629240
          Length = 1017

 Score = 1110 bits (574), Expect = 0.0
 Identities = 604/614 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattatgtgtaattgaatgcatagccatccccttgtctctgcctgtgggtactg 63
           |||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 204 ggaattcattatgtctaattgaatgcatagccatccccttgtctctgccagagggtactg 263

                                                                       
Query: 64  ggattaaaggcatgtgccaccatgctcaccttagcaaggtttttggtcctctataattac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 264 ggattaaaggcatgtgccaccatgctcaccttagcaaggtttttggtcctctataatgac 323

                                                                       
Query: 124 ttttgtgaattgactgttagtatcccttaccattctctcccttgggtttgtattttcaca 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 324 ttttgtgaattgactgttagtatcccttaccattctctcccttaggtttgtattttcgca 383

                                                                       
Query: 184 ctaggatgatatgttctaagtaatcagcagttttgctctgttctctggtgtctagaaact 243
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 384 ctaggatgatatattctaagtaatcagcagttttgctctgttctctggtgtctaggaact 443

                                                                       
Query: 244 tcttgagaaatccttgtttagagaagcggaggggatctcgagctctttaggaatgtactg 303
           ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 444 tctagagaaatccttgtttagagaagcggaggggatcttgagctctttaggaatgtactg 503

                                                                       
Query: 304 ctttcctctctcagagcaaggagaagacgcaggcactcttgtggcactcaggcagctggg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctttcctctctcagagcaaggagaagacgcaggcactcttgtggcactcaggcagctggg 563

                                                                       
Query: 364 aggactggtctaagatcagtgctactgcccgcttctagcctcactcacaaacacacaggt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aggactggtctaagatcagtgctactgcccgcttctagcctcactcacaaacacacaggt 623

                                                                       
Query: 424 aaaccttgacctagaatatgaagcggcagcttgaagcctcagggaagaagcaatggtata 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aaaccttgacctagaatatgaagcggcagcttgaagcctcagggaagaagcaatggtata 683

                                                                       
Query: 484 tacattaccagatccactctgatagtgagcctaggttctttgtcttgttaatcaagttac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tacattaccagatccactctgatagtgagcctaggttctttgtcttgttaatcaagttac 743

                                                                       
Query: 544 aggctccagcatgtctcataagcaatggaaatattttctgaacaacactcaccgaaaaac 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aggctccagcatgtctcataagcaatggaaatattttctgaacaacactcaccgaaaaac 803

                         
Query: 604 aatcgtatgacttc 617
           ||||||||||||||
Sbjct: 804 aatcgtatgacttc 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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