BAC Information

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BAC

Clone NameMSMg01-512F12
Chromosome19 (Build37)
Map Location 27,926,495 - 27,926,861
singlet/doubletsinglet
Overlap geneRfx3
Upstream geneGm815, LOC100042576, Vldlr, LOC100042588, Kcnv2, D19Bwg1357e, LOC667868, LOC100042612
Downstream geneLOC666997, LOC433235, Glis3, EG434460, EG627788, Slc1a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512F12.T7 (MSMg01no512_f12.b1)MSMg01-512F12.TJ (MSMg01no512_f12.g1)
ACCAG585325AG585326
length772779
length of high quality
(start - end)		571 (40 - 610)572 (69 - 640)
definitionCHROMAT_FILE: MSMg01no512_f12.b1 PHD_FILE: MSMg01no512_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:28 2005CHROMAT_FILE: MSMg01no512_f12.g1 PHD_FILE: MSMg01no512_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TGCTTGGTACTATAAACACAGCCATGGCGATTGAGAACTGACCACTGTGC
TTTTCTAAATCAGCATAATCCCCAAATGCACTCTAAATATATATACTCTA
ATTATATTCACAGGCAAGTGTATCCCTACCACCACACTTATCAAAGAAGC
TTTGTTTTTTTCAGCATATGGAGATCACCACAGAACTCCGCAAATGGTCA
GAATCTAGAGGATAACTGACCACAGGAGGCCTATCCCCACTTGACACATC
TATATATAATGCCGCTCTTATGCATAAAGCATTAAAGAAGAGAGGGTAGA
AAGACCTCAAGAGAAGAGAACAAAGATATCTTCTATGAAAGAGCATGTTC
TGTGGATGGCAAGGAGTTGTGCCTTTAAAATTTAACAACATGGTTGCCCA
AACAAGACCTGCACAATGACAACACCAGCTGGCGTTCCAAAGTAAATGAG
AAAAATCTCACAAAGCCCTATCCCTAGATGAATAGCAATAATGGCTGCTA
AAAGAGAATTAGTCTTCTCCGTGGAGGAAACTATCTAGGGAGAAAATATC
TAGGCCGAAAGTGGTCAGTTCTAAATCACATGTACACATGGGACACACTA
TATGAAGTCATCAGGCTACATCTATAGGTACTTATATGTAACAATAGTAA
TAAACAAGAGATATCTTGACTTTGAGAGGGCGGACATAAAAGGACTGGGG
GAGAGGAATAAATAGAGTACTN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCATGATTTATTTAAAAGGAAATTTTAGGATTT
AGTGGCTTATAACAGCATAAAGGAAGCATTAGCTTGAATGTCAAAAACTG
GTGTTGGAGGTATTATTCTCTGCTCTAAGAAGGGCATAAAAGAACAAGAA
CTTTTGAGGGTACTTAATAGCGTAGATTTTTCTCTTCTCTTTGTCCTTTT
TATTGAAAATAGATTCTTTTCTCATGTAATATATCCTAATTACAGTTTCT
ACTCCCTCTCCCTCTCCTCCTCCGAGTTGCTCACCTCCGCCCTCTGCTCT
GGATCCAGTCCCTTCCAGCCTCTCATTTAAAAAAGGCCAGGCTTCTAAAA
GATCACAACCAAACCTAACAAAATAAAATATTAGATAAAGCAAAAAGCAG
CAGGTTGAGGCAACCCAACAGAAGGAAATGGCCTTCAAGAATGGGCGCAA
GAATCAAGGACCTACTCATCACACACTTGGGGGTCCCATAAAGAATACTA
TATATAATATATACACAGAAGACCTGGTGCAGATCTCTGTCAGCTCTGTG
GTGCTGCTTCAGTCTCTTGAGTTCATATGAGCTTTGCTCAGATGATTCAA
AGAGCCTTGTTCTGCCGGTGTCTTTCATCCCCTTTGGCTCTTACACTCTT
TCCATCTCTTTTACATTTTTCCCCTGACTCTATGGGAAGGGAGTTGATGA
ATACACTCCATTTAGTGCTGTGTGTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_f12.g1 MSMg01no512_f12.g1 CHROMAT_FILE:
MSMg01no512_f12.g1 PHD_FILE: MSMg01no512_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:28 2005
         (572 letters)



>mm_chr19_27926495_27927466
          Length = 972

 Score =  702 bits (363), Expect = 0.0
 Identities = 366/367 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgatttatttaaaaggaaattttaggatttagtggcttataacagcataaaggaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 catgatttatttaaaaggaaattttaggatttagtggcttataacagcataaaggaagca 308

                                                                       
Query: 61  ttagcttgaatgtcaaaaactggtgttggaggtattattctctgctctaagaagggcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttagcttgaatgtcaaaaactggtgttggaggtattattctctgctctaagaagggcata 248

                                                                       
Query: 121 aaagaacaagaacttttgagggtacttaatagcgtagatttttctcttctctttgtcctt 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 247 aaagaacaagaacttttgagggtacttaatagcatagatttttctcttctctttgtcctt 188

                                                                       
Query: 181 tttattgaaaatagattcttttctcatgtaatatatcctaattacagtttctactccctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tttattgaaaatagattcttttctcatgtaatatatcctaattacagtttctactccctc 128

                                                                       
Query: 241 tccctctcctcctccgagttgctcacctccgccctctgctctggatccagtcccttccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tccctctcctcctccgagttgctcacctccgccctctgctctggatccagtcccttccag 68

                                                                       
Query: 301 cctctcatttaaaaaaggccaggcttctaaaagatcacaaccaaacctaacaaaataaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  cctctcatttaaaaaaggccaggcttctaaaagatcacaaccaaacctaacaaaataaaa 8

                  
Query: 361 tattaga 367
           |||||||
Sbjct: 7   tattaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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