BAC Information

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BAC

Clone NameMSMg01-512O03
Chromosome19 (Build37)
Map Location 39,040,934 - 39,041,167
singlet/doubletsinglet
Overlap geneHells
Upstream geneFer1l3, Cep55, Gpr120, Rbp4, Pde6c, 5730455O13Rik, Lgi1, Tmem20, LOC100042483, Plce1, EG667587, Noc3l, Tbc1d12
Downstream geneLOC209753, Cyp2c55, LOC100042507, Cyp2c65, LOC668278, Cyp2c66, Cyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512O03.T7 (MSMg01no512_o03.b1)MSMg01-512O03.TJ (MSMg01no512_o03.g1)
ACCAG585739AG585740
length738730
length of high quality
(start - end)
234 (62 - 295)508 (74 - 581)
definitionCHROMAT_FILE: MSMg01no512_o03.b1 PHD_FILE: MSMg01no512_o03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:11 2005CHROMAT_FILE: MSMg01no512_o03.g1 PHD_FILE: MSMg01no512_o03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATTTTTTGCATTACTAATCTCTTCCCACTACCCAGAAGGCAGGTCTT
AAACACCCATCTGGGAAGTTATTTCTGTATTCAGGACTAACCAAGCATAG
TAGCTGTCACTTTAACAGTGCATAAGGAAGTTCTAATTACCATGAAACAA
TAGACAGAAACAAGAATTGAAATGGCGGAACCAGGTGGTGGCAACTGGTG
GTGGTGGTGGAGCACAGCCCCTTTCCCCAGCATTAAGGGAGTCAGAGAGA
GGCAGGGAGTTTTCTTTGATTTCAAGGCCAGCCTGGTCTATATAGCTAAT
TCTGGAATAGCATGGGCTATACAAAGAAACCCTGTCTTGAAAAACTAAGC
ACATTAAAAATTAAAACAGCTCTCAAAAGATGGGAAAACAGTTTAAATAA
CATCATGTCCAGCAGGAATAAGGCAGCTCAGAAGGCTGGGGAAGTGATTT
ACATACCTAGCACTCATGAAACGCTGGTCATGATTGCACGAATGCCATTA
ACCTTCACTGTGAGAGGTCGGGGAAGGAGGGAAGAGTGATGGAGAAGGCA
CCCGACATCCTCCTGATCTTTACTTAATCGCAGGAGTGACCACCCATATG
GCCATGCACTTGGAGGTGTGTATGGATAGCATACCTTATGAATTACACAT
TCCCACCTTGATTAAAAAACAAAATTTTGGTCCATTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCCAAGGAATACTGAATTGCTGAG
AAGCACCTGAAAAAATATTCAACATCCTTAATCATCAGAGAAATGCAAAT
CAAAACAACCCTGAGGTTCCATCTTACAGCAGACAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCTGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAGCCTCTCTGGAAATC
AGTCTAGTTGTTCCTCAGAAAATTAAACATAGTACTACCAGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGATGTCCTAACCAGTAAGAAG
GACACATGCTCCACTATATTCATAGAAGCCTTATTTACAATAGCCAGAAT
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAATATGTG
GTACATTTACACAATGGAGTACTACTCATCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACAATCACAAAAGAACTCAAATAATATGTACTCACTGATCAGTGG
ATATTATCCCAGACACTTACTATAGCGAGATATAAGGTATAATTTGTTAA
ACACATGAAACTGAAGAATATCGAATACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_o03.b1 MSMg01no512_o03.b1 CHROMAT_FILE:
MSMg01no512_o03.b1 PHD_FILE: MSMg01no512_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:11 2005
         (234 letters)



>mm_chr19_39040734_39041367
          Length = 634

 Score =  422 bits (218), Expect = e-122
 Identities = 230/234 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattactaatctcttcccactacccagaaggcaggtcttaaacacccatctgggaagtta 60
           ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattactaagctcttcccactactcagaaggcaggtcttaaacacccatctgggaagtta 260

                                                                       
Query: 61  tttctgtattcaggactaaccaagcatagtagctgtcactttaacagtgcataaggaagt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 tttctgaattcaggactaaccaagcatagtagctgtcactttaacagtgcagaaggaagt 320

                                                                       
Query: 121 tctaattaccatgaaacaatagacagaaacaagaattgaaatggcggaaccaggtggtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaattaccatgaaacaatagacagaaacaagaattgaaatggcggaaccaggtggtgg 380

                                                                 
Query: 181 caactggtggtggtggtggagcacagcccctttccccagcattaagggagtcag 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caactggtggtggtggtggagcacagcccctttccccagcattaagggagtcag 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)