BAC Information

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BAC

Clone NameMSMg01-512O08
Chromosome19 (Build37)
Map Location 5,186,822 - 5,187,378
singlet/doubletsinglet
Overlap genePacs1
Upstream geneTbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1, Fbxl11, LOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424
Downstream geneSf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1, 2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512O08.T7 (MSMg01no512_o08.b1)MSMg01-512O08.TJ (MSMg01no512_o08.g1)
ACCAG585749AG585750
length716783
length of high quality
(start - end)		584 (42 - 625)210 (74 - 283)
definitionCHROMAT_FILE: MSMg01no512_o08.b1 PHD_FILE: MSMg01no512_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:12 2005CHROMAT_FILE: MSMg01no512_o08.g1 PHD_FILE: MSMg01no512_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:43:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCGGA
ATTCCATGTTACGAATTGTGTCCCTATTTTTCTTTTTCCTTCCTAGTACC
CCAAACTCAGCTATATTCCACTTCTCAACTTTGTCCTGGAGTTGCCACTC
ACTTTTCTCCACTTTTCCTGTCTCTTCTTTCAGTGGGTAATTTCCATCAG
TCTAGATTCAAGCACACAGATTTATATGTATGTATATGAGTACACTGTAG
CTGTCCTCAGCCTCACCAGAAGCGAGCATCAGATCCCATTACAGATGGTT
GTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGATTTCTGGAAGAG
CAATCAGTGCTCTTACCCTCTGAGCCACCTCTCCAGCTCCTGCTCCCCGA
TTTCTTTTACTGTTATTTCAATATAACACTGTTGAGCATATCTGTGAGGT
TTTTGTTTTTTTTAAACTTCAGTTATTATTTTATTTCAACTCTCTAACCT
CATGTTTTATTTACATTTCAGGCTTAAAGTTATCTGTTTATCTATTTTTC
CTTAGTCATTTAAGCACGATTTGTAATATTTCAACCCCAAGACATTTACA
CAAAAATAGGAACTTGGTTAGGTCTTATAGATTGCACTGCTTTTCTTCTT
CCCTGTGAGATCTGTTTCTTCACATGTCTAGTGATTATAGATCAAAACTG
GACATTGTAGATAAGG

TTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGAGCTACACAGAGAAA
CCCTGTCTCGGGGAAAAAAACAAAAACTAAAACTAAAAAAGAAAGAAAGA
AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGATAGAAAGAAAAAGAAATAGCCATTTGTTTTTTGTCATTTTAG
CACATTAGGAGGTCAGAAACCCTTTGGGGGGTTGTTTTTTGCCCTTGGTT
TTTCCTCCCTTTCATTTCTCGGGTTTTTAGAGAAAAAAGGGGGGTTTTTT
TTAAGGGCCTCTTTTTTTTTTTTCTATTTTTTTTGAAGGGGGGGTTNATC
CCCCCCCCCCCCCCTTTTTTTTTTTTTTGAAATTTTTTTTTCTCCCCGGG
AAACCCCACCTCTTCTTTAATAAATTATTTTGGGGGGGCTTTTTTTTTTG
AGTGTTTTTTTTTATTGAAAAGAAATAATATTTTTTTGGGTGGTGAAAAA
AATTAAGTTGGGTTTTATAAAATTTTTTTTTTTCCCATCAATATTTTTTA
TTTACCTTCTACTCCACACCCTCCTCCCCTCTTTTTTTTTATCTATATTT
TTTTCTCTCCCTCCCCCGCCTCTTTTTGNNNNTNGGNNAATAGANNNNAC
CATTATATTTAGTTCCCTCTCTCCCCTTCGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_o08.b1 MSMg01no512_o08.b1 CHROMAT_FILE:
MSMg01no512_o08.b1 PHD_FILE: MSMg01no512_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:12 2005
         (584 letters)



>mm_chr19_5186601_5187584
          Length = 984

 Score =  980 bits (507), Expect = 0.0
 Identities = 547/563 (97%), Gaps = 6/563 (1%)
 Strand = Plus / Plus

                                                                       
Query: 22  gaattgtgtccctatttttctttttccttcctagtaccccaaactcagctatattccact 81
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gaattgtgtccctatttttctttttccttcctagtaccccaaactcagctatattccact 281

                                                                       
Query: 82  tctcaactttgtcctggagttgccactcacttttctccacttttcctgtctcttctttca 141
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tctcaactttgtcctggaggtgccactcacttttctccacttttcctgtctcttctttca 341

                                                                       
Query: 142 gtgggtaatttccatcagtctagattcaagcacacagatttatatgtatgtatatgagta 201
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtgagtaatttccatcagtctagattcaagcacacagatttatatgtatgtatatgagta 401

                                                                       
Query: 202 cactgtagctgtcctcagcctcaccagaagcgagcatcagatcccattacagatggttgt 261
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 402 cactgtagctgtcctcagcctcaccagaagagggcatcagatcccattacagatggttgt 461

                                                                       
Query: 262 gagccaccatgtggttgctgggaattgaactcaggatttctggaagagcaatcagtgctc 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gagccaccatgtggttgctgggaattgaactcaggatttctggaagagcaatcagtgctc 521

                                                                       
Query: 322 ttaccctctgagccacctctccagctcctgctccccgatttcttttactgttatttcaat 381
           ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 522 ttaccctctgagccacctctctagctcctgctccccaatttcttttactgttatttcaat 581

                                                                       
Query: 382 ataacactgttgagcatatctgtgaggtttttgttttttttaaacttcagttattatttt 441
           |||||||||||||||||||| |||||||||||     |||||| ||||||||||||||||
Sbjct: 582 ataacactgttgagcatatcagtgaggttttt-----ttttaa-cttcagttattatttt 635

                                                                       
Query: 442 atttcaactctctaacctcatgttttatttacatttcaggcttaaagttatctgtttatc 501
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 atttcagctctctaacctcatgttttatttacatttcaggcttaaagttatctgtttatc 695

                                                                       
Query: 502 tatttttccttagtcatttaagcacgatttgtaatatttcaaccccaagacatttacaca 561
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 696 tatttttccttagtcatttaagcacaatttgtaatatttcaaccccaagacatttacacg 755

                                  
Query: 562 aaaataggaacttggttaggtct 584
           |||||||||||||||||||||||
Sbjct: 756 aaaataggaacttggttaggtct 778


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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