Query= MSMg01no513_h21.b1 MSMg01no513_h21.b1 CHROMAT_FILE:
MSMg01no513_h21.b1 PHD_FILE: MSMg01no513_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:00 2005
(583 letters)
>mm_chr19_41863234_41864216
Length = 983
Score = 924 bits (478), Expect = 0.0
Identities = 494/500 (98%), Gaps = 3/500 (0%)
Strand = Plus / Plus
Query: 86 aaaaataagaacctgaaggtgattgtcaaatcatgacaattatcactagagttgatatag 145
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 286 aaaaataagaacctgaaggtgattgtcaaatcatgacaattattactagagttgatatag 345
Query: 146 gatataatctttttttcttttctttaacatttttaataattcatgtctttccatgtgtat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gatataatctttttttcttttctttaacatttttaataattcatgtctttccatgtgtat 405
Query: 206 gtgtgtgggttacacatatgtggtggtgcatatgtatgaggctatggtctttgaatgttt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gtgtgtgggttacacatatgtggtggtgcatatgtatgaggctatggtctttgaatgttt 465
Query: 266 aaatatttcagcctgcctaatgattccctcatatttaataaaataaaacagggcccctct 325
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 466 aaatatttcagcctgcctaatgattccctcatatttaataaaataaaacagggccccttt 525
Query: 326 aataccttatcaaaagtagtacccacacttcctggctgactctgcggcctgtcccatagg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 aataccttatcaaaagtagtacccacacttcctggctgactctgcggcctgtcccatagg 585
Query: 386 agggaagtcatactcaatactgtcagcctggtcaaaagcccatggctagggggg--ccca 443
||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 586 agggaagtcatacccaatactgtcagcctggtcaaaagcccatggctaggggggggccca 645
Query: 444 caggccttcaggagcaacctactattgtttttgctaaattatccagctgtcaaactgtct 503
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 646 caggccttcaggagcaacctactattgtttt-gctaaattatccagctgtcaaactgtct 704
Query: 504 tctaaatatttatgctacagatgtgagctgctttcagcctcagccagaaagccttctttt 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 tctaaatatttatgctacagatgtgagctgctttcagcctcagccagaaagccttctttt 764
Query: 564 tcaagtgggcatcagtagat 583
||||||||||||||||||||
Sbjct: 765 tcaagtgggcatcagtagat 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_h21.g1 MSMg01no513_h21.g1 CHROMAT_FILE:
MSMg01no513_h21.g1 PHD_FILE: MSMg01no513_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:00 2005
(571 letters)
>mm_chr19_41994582_41995557
Length = 976
Score = 1056 bits (546), Expect = 0.0
Identities = 567/576 (98%), Gaps = 5/576 (0%)
Strand = Plus / Minus
Query: 1 ctccgtctgggctacataaaactgtcaaaaaaaaagagaga----gagagagaaagggat 56
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 642 ctccgtctgggctacataaaactgtcaaaaaaaaagagagagagggagagagaaagggat 583
Query: 57 gcggagtttagggttctctctgggccagtgtgaatgacatgggtggtagcagtaggtgtc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gcggagtttagggttctctctgggccagtgtgaatgacatgggtggtagcagtaggtgtc 523
Query: 117 actatggccctcagtgtttcctcaccaggattactttgaggagggaatatggaagattgt 176
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 522 actatggccctcagtgtttcctcaccaggattactttgaggagggaatacggaagattgt 463
Query: 177 tcagagcatgctaatacttgccattgtatttactatattactgattcaatcagggagcta 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tcagagcatgctaatacttgccattgtatttactatattactgattcaatcagggagcta 403
Query: 237 taaaatatcaggctagacaaaacatcagttcttcaattttga-tttttttttccctaata 295
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 402 taaaatatcaggctagacaaaacatcagttcttcaattttgattttttttttccctaata 343
Query: 296 tcacctagaaatatgctgagagttaaatttcttgacagcagttttacattttcctttatt 355
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 342 tcacctagaaatatgctgagagttaaatttcttggcagcagttttacattttcctttatt 283
Query: 356 tccttccttcagtgaacctggaatgcatcagttattcgtatatcttaaagaagtataaat 415
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 282 tccttccttcagtgaacctggaatgcatcagttatttgtatatcttaaagaagtataaat 223
Query: 416 caaggattaggataattaatttgtgccaagtggtggtggtgtgagcttttaatccctgca 475
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 222 caaggattaggataattaatttatgccaagtggtggtggtgtgagcttttaatccctgca 163
Query: 476 tttaggaagcagaagcaagtaatctcagtttgatgccagcctggtctatggagggagttc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tttaggaagcagaagcaagtaatctcagtttgatgccagcctggtctatggagggagttc 103
Query: 536 caggataaccaaggctacaaagagaaaccctgtctc 571
||||||||||||||||||||||||||||||||||||
Sbjct: 102 caggataaccaaggctacaaagagaaaccctgtctc 67
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 976
Length adjustment: 10
Effective length of query: 561
Effective length of database: 966
Effective search space: 541926
Effective search space used: 541926
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
