BAC Information

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BAC

Clone NameMSMg01-513N21
Chromosome19 (Build37)
Map Location 34,200,217 - 34,200,816
singlet/doubletsinglet
Overlap geneAnkrd22
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn
Downstream geneStambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-513N21.T7 (MSMg01no513_n21.b1)MSMg01-513N21.TJ (MSMg01no513_n21.g1)
ACCAG586486AG586487
length756757
length of high quality
(start - end)		604 (41 - 644)574 (70 - 643)
definitionCHROMAT_FILE: MSMg01no513_n21.b1 PHD_FILE: MSMg01no513_n21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:32 2005CHROMAT_FILE: MSMg01no513_n21.g1 PHD_FILE: MSMg01no513_n21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:44:32 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTCAAATTCCTTCCATGGTATTGCTTTGCATTTGAAGTGATTTTTAGACT
ATTCATGTAGTGTGGCTGCTTGCATTGTAGTGTTTTCCACAATGCTCCTA
AACCCCAGAGTTCTTTAAAATAGTTTGTTTCATTATCAGTCAGTTTTGTG
TAATTATATTGGGCAAAATAACCTATAAGGTGAAATACTACAGGTTTTTG
AGACTGGATCTCCTCTAGTTGCAATCCTTTTAAACAGTGTCCCACGGTGA
AAACTAACTTCACGGATGGCATGTATGATTCCATTTACTAATGGCTGTTC
TACATAGTATGCCCTGTGTTTTGTTACACATCTCAGGTTTACATATAATT
CATTGTTCTTGTTTGCCTGCAGATGTTCGCAGTGCCTTGTATTTAGAATC
TTTTCAGGTTTTGCTGGAAAGAAAAGTCATCTTCTAAAGTTTGAAGATGG
GACTAGTGTTCAGCTGTCTCCATGCTGACTGCAGTATCTGGGTTAACATA
TATGTTACATATACATTATGCATATGTAATGTGTGGAAGTCAAAGCTTAC
AAAAACAGAAGTGTGCAGTGTTACCTCTTTTATGTAGCTACCAGATGATG
GACAGTAGTTATTCCCATTAACACAAGCTCCAGTAGGAATTCCACCAGCT
GATGGGCACAGCCCCCAACAAGGTGTACAAAATGTTTATGAAACATTTCC
TTGTGG

AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAA
CTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGGGGAACACTCC
TCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTC
TGGTGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCCGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGAACA
CATGCATGCCCACTTCGGCAGCACATATACTAAAATTGGAACGATACATA
GAAGATTAGCATGGCCCCTGCGCAAGGATGACACGCAAATTCGTGAAGCG
TTCCATATTTTTAAGTGATGAAACAAATGGATCTGACAGATATCTACAGA
ACATTTTATCCTAAAACAAAAGGATATACCTTCTTCTCAGCACCTCATGG
TACCTTCTCCAAAATTGACCACATAATAGGTCACAAAACAGGCCTCAACA
GATTCAAAAATATTTGAATTGTCCCATGCACTAAGGCTGATCTTCTNTAT
ACAAAAAAATAACAGAAAGCCAACACTCACGTGGAAACTGAACACACTCT
TCTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no513_n21.b1 MSMg01no513_n21.b1 CHROMAT_FILE:
MSMg01no513_n21.b1 PHD_FILE: MSMg01no513_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:32 2005
         (604 letters)



>mm_chr19_34200012_34201016
          Length = 1005

 Score = 1052 bits (544), Expect = 0.0
 Identities = 586/600 (97%), Gaps = 1/600 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcctcaaattccttccatggtattgctttgcatttgaagtgatttttagactattca 65
           |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct: 805 aattcctcaaattccttccatggtattgctctgcatttgaagtgattttttgactattca 746

                                                                       
Query: 66  tgtagtgtggctgcttgcattgtagtgttttccacaatgctcctaaaccccagagttctt 125
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtagtgtggttgcttgcattgtagtgttttccacaatgctcctaaaccccagagttctt 686

                                                                       
Query: 126 taaaatagtttgtttcattatcagtcagttttgtgtaattatattgggcaaaataaccta 185
           |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 685 taaaatagtttgtttcattatcagtcggttttgtgtaattatattgggctaaataaccta 626

                                                                       
Query: 186 taaggtgaaatactacaggtttttgagactggatctcctctagttgcaatccttttaaac 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 taaggtgaaatactacaggtttttgagactggatctcctctagttgcaatccttttaaac 566

                                                                       
Query: 246 agtgtcccacggtgaaaactaacttcacggatggcatgtatgattccatttactaatggc 305
           ||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 565 agtgttccacggtgaaaacgaacttcacggatggcatgtacgattccatttactaatggc 506

                                                                       
Query: 306 tgttctacatagtatgccctgtgttttgttacacatctcaggtttacatataa-ttcatt 364
           || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 505 tgctctacatagtatgccctgtgttttgttacacatctcagttttacatataaattcatt 446

                                                                       
Query: 365 gttcttgtttgcctgcagatgttcgcagtgccttgtatttagaatcttttcaggttttgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 445 gttcttgtttgcctgcagatgttcgcagtgccttgtatttagaatctttgcaggttttgc 386

                                                                       
Query: 425 tggaaagaaaagtcatcttctaaagtttgaagatgggactagtgttcagctgtctccatg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggaaagaaaagtcatcttctaaagtttgaagatgggactagtgttcagctgtctccatg 326

                                                                       
Query: 485 ctgactgcagtatctgggttaacatatatgttacatatacattatgcatatgtaatgtgt 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 ctgactgcagtatctgggttaacatatatgttacatatacattatgcatatgtaatgtat 266

                                                                       
Query: 545 ggaagtcaaagcttacaaaaacagaagtgtgcagtgttacctcttttatgtagctaccag 604
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggaagtcaaagcttataaaaacagaagtgtgcagtgttacctcttttatgtagctaccag 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1005
Length adjustment: 10
Effective length of query: 594
Effective length of database: 995
Effective search space:   591030
Effective search space used:   591030
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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