Query= MSMg01no514_a19.b1 MSMg01no514_a19.b1 CHROMAT_FILE:
MSMg01no514_a19.b1 PHD_FILE: MSMg01no514_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:47 2005
(669 letters)
>mm_chr19_26689745_26690813
Length = 1069
Score = 1270 bits (657), Expect = 0.0
Identities = 663/665 (99%)
Strand = Plus / Minus
Query: 5 gaattcttcagcagtccaccctgtcttcttaacccagacattcttgcctttacaactggg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gaattcttcagcagtccaccctgtcttcttaacccagacattcttgcctttacaactggg 810
Query: 65 gagtgtgtgcttttaaaaataaaaggccatggttgcacttcccacaaccccaaaccccac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gagtgtgtgcttttaaaaataaaaggccatggttgcacttcccacaaccccaaaccccac 750
Query: 125 agttagcctaagcctccacctccctctcccctgaaggagcacctccatctgcatattaaa 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 agtcagcctaagcctccacctccctctcccctgaaggagcacctccatctgcatattaaa 690
Query: 185 aggaggtcaactccactgaattttaagggtcaccactccaactatgacaacctagacaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aggaggtcaactccactgaattttaagggtcaccactccaactatgacaacctagacaaa 630
Query: 245 acttaaagactcctgtctaattgcaatccaggaaattccaaggatctgcatgtgggtaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 acttaaagactcctgtctaattgcaatccaggaaattccaaggatctgcatgtgggtaat 570
Query: 305 agaacttaaacataccaaatatgcttcataattattctagtcattaggagacactgtatc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 agaacttaaacataccaaatatgcttcataattattctagtcattaggagacactgtatc 510
Query: 365 aggctcccattgcaaaggtgaaggcaggaaagcacaattctgcttgtccaaagtcacatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aggctcccattgcaaaggtgaaggcaggaaagcacaattctgcttgtccaaagtcacatg 450
Query: 425 ggtcacaggagcaaaactccttaaagaacccttcctttgacttgcagtgcaccacccaag 484
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggtcacaggagcaaaactccttatagaacccttcctttgacttgcagtgcaccacccaag 390
Query: 485 cagggtgtctatcagggtaagcctaccaccactgaatcaaggctaccagagctctctacc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cagggtgtctatcagggtaagcctaccaccactgaatcaaggctaccagagctctctacc 330
Query: 545 ttcctgctgagtttagggagctggagaaaagcctgagtgagtgagttgtggagtgaatgt 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ttcctgctgagtttagggagctggagaaaagcctgagtgagtgagttgtggagtgaatgt 270
Query: 605 gtattgttaacacctgcaaggaccccacagtctcaggttcagaggggcagcaaagccttt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gtattgttaacacctgcaaggaccccacagtctcaggttcagaggggcagcaaagccttt 210
Query: 665 ggggg 669
|||||
Sbjct: 209 ggggg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_a19.g1 MSMg01no514_a19.g1 CHROMAT_FILE:
MSMg01no514_a19.g1 PHD_FILE: MSMg01no514_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:47 2005
(541 letters)
>mm_chr19_26551173_26552112
Length = 940
Score = 1015 bits (525), Expect = 0.0
Identities = 537/541 (99%), Gaps = 1/541 (0%)
Strand = Plus / Plus
Query: 1 actgttggagcagatctgggttctaagaagagaggattccacagaaggctagtatgacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgttggagcagatctgggttctaagaagagaggattccacagaaggctagtatgacca 260
Query: 61 ctttactgatgggggggtggggaagagtggcgagggggggtcatctcagtgaggaatgaa 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttactgatgggggg-tggggaagagtggcgagggggggtcatctcagtgaggaatgaa 319
Query: 121 gtggatacagaggaagaaagttaggaatgtggctttgactgtgtaaatttaggggtacct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtggatacagaggaagaaagttaggaatgtggctttgactgtgtaaatttaggggtacct 379
Query: 181 attgaacattccaatagagaggggtatatgcaaagtacagagtcacacctcaggctggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attgaacattccaatagagaggggtatatgcaaagtacagagtcacacctcaggctggag 439
Query: 241 tatgattgtcaagagtgttctgcagttatgacaagggaagccatggagccaaatgagatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tatgattgtcaagagtgttctgcagttatgacaagggaagccatggagccaaatgagatg 499
Query: 301 gccaagggagtgagcttgaggggagaagagaagaggtttcaggtctaaacaccgatgcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gccaagggagtgagcttgaggggagaagagaagaggtttcaggtctaaacaccgatgcac 559
Query: 361 tgtacacgtgaccttcaatgtcaccttgcctcctacagcactctgtgagccaagagaacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtacacgtgaccttcaatgtcaccttgcctcctacagcactctgtgagccaagagaacc 619
Query: 421 tcatgtagagatgttttctgtgccatgctctgtgtggctaaaggaacttggttttgagaa 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 620 tcatgtagagatgttttctgtgccatgctctgtgtgactaaaggaacttggttttgagaa 679
Query: 481 tgagatacacttatgctggaatatcatctacattgttcattgtgggaactcaatgattga 540
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 680 tgagacacacttatgctggaatatcatctacattgttcgttgtgggaactcaatgattga 739
Query: 541 t 541
|
Sbjct: 740 t 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 940
Length adjustment: 10
Effective length of query: 531
Effective length of database: 930
Effective search space: 493830
Effective search space used: 493830
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
