Query= MSMg01no514_e12.b1 MSMg01no514_e12.b1 CHROMAT_FILE:
MSMg01no514_e12.b1 PHD_FILE: MSMg01no514_e12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:07 2005
(505 letters)
>mm_chr19_54589086_54589990
Length = 905
Score = 698 bits (361), Expect = 0.0
Identities = 420/447 (93%), Gaps = 18/447 (4%)
Strand = Plus / Minus
Query: 59 acatcacacaaacccccattcctttcctgtcttgatttctggaaaacttgtaggcagaat 118
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 905 acatcacacaaacccccattcctttcctgccttgatttctggaaatcttgtaggcagaat 846
Query: 119 tccattacctagttcatctattgtcacttcctcctcctcctgagagctggagatgtctct 178
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 845 tccattacttagttcatctattgtcacttcctcctcctcctgagagctggaga--tctct 788
Query: 179 ctctctccctctctccctctccctctccctctccctctccctccctctctctttctctct 238
|||| | ||||| | ||| |||| ||||| ||| |||||||| |||||||
Sbjct: 787 ctct-t---tctct-----t---tct--ctct--ctctctctctctctctctctctctct 744
Query: 239 ctctctctctctctctctctctctctgctctatttctcagtatttaaattctgttgcaga 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctctctctctctctctctctctctctgctctatttctcagtatttaaattctgttgcaga 684
Query: 299 tgtttttgtagtaagtagaggataaaccttgaaccgatggagatcaaatctagagttctt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgtttttgtagtaagtagaggataaaccttgaaccgatggagatcaaatctagagttctt 624
Query: 359 gctgcactaagctcctgtcactgtctaacatcaaggctaatgtctccttgagcaacttat 418
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 623 gctgcactaagctcctgtcactgtctaacatcaaggctaatatctccttgagcaacttat 564
Query: 419 tcaagtgctacttggcaccaggacagagctagtagggaaaaaaatctgtgatttactttc 478
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 563 tcaagtgctacttggcaccaggacagagctagtggggaaaaaaatctgtgatttactttc 504
Query: 479 tcggagatgaagccaacgggagcattt 505
|| ||||||||||||||||||||||||
Sbjct: 503 tcagagatgaagccaacgggagcattt 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_e12.g1 MSMg01no514_e12.g1 CHROMAT_FILE:
MSMg01no514_e12.g1 PHD_FILE: MSMg01no514_e12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:45:07 2005
(577 letters)
>mm_chr19_54433194_54434168
Length = 975
Score = 855 bits (442), Expect = 0.0
Identities = 550/604 (91%), Gaps = 34/604 (5%)
Strand = Plus / Plus
Query: 1 acacggtcaaggcaagccaaaggcactgcagagaagaaaagcaaacgccgggggagagca 60
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct: 201 acacggtcaaggcaagccaaaggcactgcatagaagaaaagcaaacgctgggggagagca 260
Query: 61 ccttcccgtacgcatcactgttttgtttaattattaatttattttgaatttagtaggagg 120
||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 ccttcccgtacacatcgctgttttgtttaattattaatttgttttgaatttagtaggagg 320
Query: 121 gatttcattgtgaaattttcaaacatttgttttgtaatagtattttcaaatatttgtaat 180
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 gatttcattgtgaagttttcaaacatttgttttgtaataatattttcaaatatttgtaat 380
Query: 181 aataacatttttgaggatttcatacatgtataca-tgta--tgaaatcctcatgtgctcc 237
||||||||| |||||||||||||||||||||||| | || || ||||||||||||
Sbjct: 381 aataacattcttgaggatttcatacatgtatacaatatacttg-----ctcatgtgctcc 435
Query: 238 cctcttttcttcatccctgtgatccactttataatcttctatctccaatagtcttctttt 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cctcttttcttcatccctgtgatccactttataatcttctatctccaatagtcttctttt 495
Query: 298 tgtgctcatgttacatttgttctattaccccaccgttgctcaaaacctcttcttgtggtc 357
| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 496 tctgctcatgttacatttgttctattaccccaccattgctcaaatcctcttcttgtggtc 555
Query: 358 tttcttctagcttcatatctctaacctatagcctctctctctatctctctctctctctct 417
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 556 tctcttctagcttcatatctctaacctatagcctctctctctctctctctctctctctct 615
Query: 418 ctctctcacacacacacacacacacacacacacacacactca-a---------------a 461
||||||| | | | | ||||||||||||||||||||||| | | |
Sbjct: 616 ctctctctctctctcccacacacacacacacacacacac--agagagagagagagaggga 673
Query: 462 gagagagagagagag--------agagagagagagagagagagagagagagagagagaga 513
||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 674 gagagagagagagagggagagagagagagagagagagagagagagagagagagagagaga 733
Query: 514 gagagagagagagagaaggaactagggtctgtaatctgcttttgagaagaaaacatggga 573
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 734 gagagagagagagagaaggaactagggtctgtaatctgcttttgagaaaaaaacatggga 793
Query: 574 tgta 577
||||
Sbjct: 794 tgta 797
Score = 83.9 bits (43), Expect = 3e-20
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 486 gagagagagagagagagagagagagagagagagagagagagag 528
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagagagagagagagagagagagagagagagagagagagagag 588
Score = 83.9 bits (43), Expect = 3e-20
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 484 gagagagagagagagagagagagagagagagagagagagagag 526
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagagagagagagagagagagagagagagagagagagagagag 588
Score = 83.9 bits (43), Expect = 3e-20
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 482 gagagagagagagagagagagagagagagagagagagagagag 524
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagagagagagagagagagagagagagagagagagagagagag 588
Score = 83.9 bits (43), Expect = 3e-20
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 480 gagagagagagagagagagagagagagagagagagagagagag 522
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagagagagagagagagagagagagagagagagagagagagag 588
Score = 83.9 bits (43), Expect = 3e-20
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 478 gagagagagagagagagagagagagagagagagagagagagag 520
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagagagagagagagagagagagagagagagagagagagagag 588
Score = 83.9 bits (43), Expect = 3e-20
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 476 gagagagagagagagagagagagagagagagagagagagagag 518
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagagagagagagagagagagagagagagagagagagagagag 588
Score = 83.9 bits (43), Expect = 3e-20
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 474 gagagagagagagagagagagagagagagagagagagagagag 516
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagagagagagagagagagagagagagagagagagagagagag 588
Score = 83.9 bits (43), Expect = 3e-20
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 472 gagagagagagagagagagagagagagagagagagagagagag 514
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagagagagagagagagagagagagagagagagagagagagag 588
Score = 83.9 bits (43), Expect = 3e-20
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 470 gagagagagagagagagagagagagagagagagagagagagag 512
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagagagagagagagagagagagagagagagagagagagagag 588
Score = 83.9 bits (43), Expect = 3e-20
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 468 gagagagagagagagagagagagagagagagagagagagagag 510
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagagagagagagagagagagagagagagagagagagagagag 588
Score = 83.9 bits (43), Expect = 3e-20
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 466 gagagagagagagagagagagagagagagagagagagagagag 508
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagagagagagagagagagagagagagagagagagagagagag 588
Score = 83.9 bits (43), Expect = 3e-20
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 464 gagagagagagagagagagagagagagagagagagagagagag 506
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagagagagagagagagagagagagagagagagagagagagag 588
Score = 83.9 bits (43), Expect = 3e-20
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 462 gagagagagagagagagagagagagagagagagagagagagag 504
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagagagagagagagagagagagagagagagagagagagagag 588
Score = 81.9 bits (42), Expect = 1e-19
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 461 agagagagagagagagagagagagagagagagagagagagag 502
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 agagagagagagagagagagagagagagagagagagagagag 588
Score = 81.9 bits (42), Expect = 1e-19
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 488 gagagagagagagagagagagagagagagagagagagagaga 529
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagagagagagagagagagagagagagagagagagagagaga 589
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 263
Number of extensions: 68
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 20
Length of query: 577
Length of database: 975
Length adjustment: 10
Effective length of query: 567
Effective length of database: 965
Effective search space: 547155
Effective search space used: 547155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
