Query= MSMg01no514_p06.b1 MSMg01no514_p06.b1 CHROMAT_FILE:
MSMg01no514_p06.b1 PHD_FILE: MSMg01no514_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:03 2005
(582 letters)
>mm_chr19_55168329_55169310
Length = 982
Score = 992 bits (513), Expect = 0.0
Identities = 561/577 (97%), Gaps = 4/577 (0%)
Strand = Plus / Plus
Query: 8 gaattcc-ctaatgtctctagaagacgtttaatatccgagcagatcagttagggattact 66
||||||| |||| ||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 208 gaattccactaacgtctctagaagacgtttaaaatccgagcagaagagttaggggttact 267
Query: 67 gcttaaaaactgacagaatgaagaaaatacatgttttattgagcagtacttcttatactt 126
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gcttaaaaacttacagaatgaagaaaatacatgttttattgagcagtacttcttatactt 327
Query: 127 caaagatagtcacaaactcaagtttaactttgaaaccctaaaaccaaaggcaatggtatt 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 caaagatagtcacaaactcaagtttaactttgaaaccctaaaaccaaaggcaatggtatt 387
Query: 187 tcttccttcccacaccatggtgccctccatccctacagagcggggacccacaatcagctt 246
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 388 tcttccttcccacaccacggtgccctccatccctagagagcggggacccacaatcagctt 447
Query: 247 ccatcacagaagtcacagctttcagagttccccaaatacaaactatcatcctaaatacca 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccatcacagaagtcacagctttcagagttccccaaatacaaactatcatcctaaatacca 507
Query: 307 cagttactcccgggcccctggcccacaagacacacgagaataattaccattgaatgagtg 366
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 508 cagttactcgcgggcccctggcccacaagacacacgagaattattaccattgaatgagtg 567
Query: 367 agaaaactgaggctgccaaaacttgagtcaatctcagagctctctattccctaaaatgac 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 agaaaactgaggctgccaaaacttgagtcaatctcagagctctctattccctaaaatgac 627
Query: 427 tggccagttaataccaaaaagtacagctaccagtcactttacaggtgatccttatcaatg 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tggccagttaataccaaaaagtacagctaccagtcactttacaggtgatccttatcaatg 687
Query: 487 tgagcaagataaaaaaaaatccaaaagtaaaaagtgccaacaagatataaaaatcactta 546
|||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 688 tgagcaagatcaaaaaaa-tccaaaaataaaaagtgccaacaagatataaaaatcactta 746
Query: 547 atctctttacagaaaactggtagtt-caaaaaacaga 582
|||||||||||||||||||| |||| |||||||||||
Sbjct: 747 atctctttacagaaaactgg-agtttcaaaaaacaga 782
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space: 555984
Effective search space used: 555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_p06.g1 MSMg01no514_p06.g1 CHROMAT_FILE:
MSMg01no514_p06.g1 PHD_FILE: MSMg01no514_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:03 2005
(389 letters)
>mm_chr19_55295513_55296301
Length = 789
Score = 706 bits (365), Expect = 0.0
Identities = 383/389 (98%)
Strand = Plus / Minus
Query: 1 ttacaacaggatacaaggcacacatgctactcttgttttgctgatgggagacagagcact 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 723 ttacaacaggatacaaggcacacatgctactcttgttttgcagatgggagacagagcact 664
Query: 61 tacatagtttgcctcaagtctcatagctacggaatagagccaataggattcaagtccagg 120
| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 catatagcttgcctcaagtctcatagctacggaatagagccaataggattcaagtccagg 604
Query: 121 catgtcccacaccacattatgtagcatgaaggactagagatttccgctatgtttcataac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 catgtcccacaccacattatgtagcatgaaggactagagatttccgctatgtttcataac 544
Query: 181 agggacgagccaatctcctaagtaggtgcccatcagggtatggcagggaatactcagagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agggacgagccaatctcctaagtaggtgcccatcagggtatggcagggaatactcagagg 484
Query: 241 agggtagagagagagatccagctctgccatgaaggcagggagtatgcagggtgtgggtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agggtagagagagagatccagctctgccatgaaggcagggagtatgcagggtgtgggtgg 424
Query: 301 ctagatacaaaagcccaagatgactcactgtaggtatacagatggcgcggagggatgggg 360
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 423 ctagatacaaaagcccaagatgactcactgtaggtatacagatggtggggagggatgggg 364
Query: 361 aaggcaggtattgagttgggaagatgagc 389
|||||||||||||||||||||||||||||
Sbjct: 363 aaggcaggtattgagttgggaagatgagc 335
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
