BAC Information

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BAC

Clone NameMSMg01-515G01
Chromosome19 (Build37)
Map Location 10,631,238 - 10,631,888
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040152, Stxbp3b, LOC623688, LOC100040178, LOC100040192, 6720475J19Rik, LOC100040203, Incenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik
Downstream geneTmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3, Tmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik, 5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515G01.T7 (MSMg01no515_g01.b1)MSMg01-515G01.TJ (MSMg01no515_g01.g1)
ACCAG587631AG587632
length774778
length of high quality
(start - end)		654 (44 - 697)539 (74 - 612)
definitionCHROMAT_FILE: MSMg01no515_g01.b1 PHD_FILE: MSMg01no515_g01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:40 2005CHROMAT_FILE: MSMg01no515_g01.g1 PHD_FILE: MSMg01no515_g01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAAGTTCCTTCTCAAGGACCACGGCAAGGTGAGGTGATGGAGAAAGC
CCTGGTCCCTGCACCCCATCTGAACTACCTTCATACACACCCCTGCTCTG
AGTCTCAGAGGAAAGGAGGGTGGACCAGTTGCTTGTTTTTGTAAATAATG
GGTCTTAAATCACTCTGCCTAAACATTTTGATATTGTATACACATATAGC
TCTCATGCTACAGTGAAAAGTTTACCCATTGTCAACAGAGATGATATAAT
CTATACCCTTAATAGCACCTGGTTGGTTAAGAAAATGATGCTGTTTCATG
TCAGGATGCCACAACAGCATAGGTACCAAAAGTGGACACAGACTAAGTCA
GTAACCTGCAGGAACCTTAGAATATGCAGCTGGGTCTCCTGCCCTCTGGG
GTCTAACCCAAAGCTTGGGGCTGCTAAGCAAACACTCCCCACTGGGTTTT
ATCTATAGCTGTGCTCTTACACACTTTTCTTTAGTAAGCCACAAATAAAA
CTGAGCCCCAGGCTGGAGAGACGGCTCGGTGGTTAAGAGCACTGACTGCT
CTTTCTGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAA
CCATCTGTGATAGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCT
ACAGTGTACTCACATACATAAATAAATAATTCTTAAAAAAAAAAAAAAGA
TAAACAAAACTGAGCCCTCTTACT

ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTGAACTCCAAGCCAGTCTGGGCTAC
ACAGGGAGACCTTGTTTCAAAACCAAAACAAAATGTTGTTCTTCTCTGGG
CATCACAGTTCACACATGTTGTCTCTGAGCTTCATCCGTGTAAGACTGTT
GGACTCTGGCTGCCTGATATATGTACTTCATTCCATGTCACTCTCCAGTT
CACAGACATGTGGAAGCAGCTGCCTTTTGACTATCATAAACAGCGCTGCT
GTGTTCATACACAAATGGCTGTCCGAGTTCCTGTTTTCATTTCTTCTATG
CAGATACAGAAACAGAACTGCTGTGTCATACAGTAAGTGACCTGTTGTGG
GATCACTGTGCTGCCTCCTACAGTGGGCAAACCACTTCACATTCCACAAA
AAACATACACGCCTTCACTTCTCCACATTCTCATTAACACTTACTTCCTA
TTTTTACTCAGTGTGTGACTCATGTGCATGTTTGTGGTGACTGTGATGTA
TATTCTTATTGGTGTGTATATATGTATGTGTGAGTGTATGGTATATGTAA
TGTATATTCNTATTANNATGTGNNCTTGTATGTGTGAAGAATGTGGTATA
TATGATATTAACTCATCATTATGTGTTCTTGTATTTTTGAGTATATGTAA
TATGTTGAAGTATTATTTATTTGATATGTGTACTGATACTTTTAGCAACA
ATAATACTATTAATACGATTAAATAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_g01.b1 MSMg01no515_g01.b1 CHROMAT_FILE:
MSMg01no515_g01.b1 PHD_FILE: MSMg01no515_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:40 2005
         (654 letters)



>mm_chr19_10631035_10632088
          Length = 1054

 Score = 1143 bits (591), Expect = 0.0
 Identities = 636/651 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaagttccttctcaaggaccacggcaaggtgaggtgatggagaaagccctggt 63
           |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaagttcccactaaaggaccacggcaaggtgaggtgatggagaaagccctggt 263

                                                                       
Query: 64  ccctgcaccccatctgaactaccttcatacacacccctgctctgagtctcagaggaaagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccctgcaccccatctgaactaccttcatacacacccctgctctgagtctcagaggaaagg 323

                                                                       
Query: 124 agggtggaccagttgcttgtttttgtaaataatgggtcttaaatcactctgcctaaacat 183
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 324 agggtggaccagttgcttgtttttgtaaattatgggtcttaaatcactctgcctaaacat 383

                                                                       
Query: 184 tttgatattgtatacacatatagctctcatgctacagtgaaaagtttacccattgtcaac 243
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttgatattgtatacacatatagttctcatgctacagtgaaaagtttacccattgtcaac 443

                                                                       
Query: 244 agagatgatataatctatacccttaatagcacctggttggttaagaaaatgatgctgttt 303
           ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 agagatgatataatctatagccttaatatcacctggttggttaagaaaatgatgctgttt 503

                                                                       
Query: 304 catgtcaggatgccacaacagcataggtaccaaaagtggacacagactaagtcagtaacc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catgtcaggatgccacaacagcataggtaccaaaagtggacacagactaagtcagtaacc 563

                                                                       
Query: 364 tgcaggaaccttagaatatgcagctgggtctcctgccctctggggtctaacccaaagctt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgcaggaaccttagaatatgcagctgggtctcctgccctctggggtctaacccaaagctt 623

                                                                       
Query: 424 ggggctgctaagcaaacactccccactgggttttatctatagctgtgctcttacacactt 483
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 624 ggggctgctaagcaaacactccccactgggctttatctatagccgtgctcttacacactt 683

                                                                       
Query: 484 ttctttagtaagccacaaataaaactgagccccaggctggagagacggctcggtggttaa 543
           |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 684 ttctttagtaagccacaaataaaactcagccccaggctggagagacggctcagtggttaa 743

                                                                       
Query: 544 gagcactgactgctctttctgaggtcctgagttcaattcccagcaaccacatggtggctc 603
           ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 744 gagcactgactgctcttcctgaggtcctgagttcaattcccagaaaccacatggtggctc 803

                                                              
Query: 604 acaaccatctgtgataggatctgatgccctcttctggtgtgtctgaagaca 654
           ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 804 acaactatctgtgataggatctgatggcctcttctggtgtgtctgaagaca 854


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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