BAC Information

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BAC

Clone NameMSMg01-515H21
Chromosome19 (Build37)
Map Location 41,608,076 - 41,608,552
singlet/doubletsinglet
Overlap genenone
Upstream geneAldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352
Downstream geneLcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1, Zdhhc16, Mms19l, Ubtd1, Ankrd2, 0610010D20Rik, 4933411K16Rik, BC023055, Pi4k2a, Avpi1, Marveld1, EG628994, LOC100042633, Zfyve27, Sfrp5, 4933417O08Rik, Crtac1, D19Ertd386e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-515H21.T7 (MSMg01no515_h21.b1)MSMg01-515H21.TJ (MSMg01no515_h21.g1)
ACCAG587718AG587719
length1,487791
length of high quality
(start - end)		---476 (82 - 557)
definitionCHROMAT_FILE: MSMg01no515_h21.b1 PHD_FILE: MSMg01no515_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:50 2005CHROMAT_FILE: MSMg01no515_h21.g1 PHD_FILE: MSMg01no515_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:46:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCATACTGCTCTTTTTGGTTTTCTTCTGTCTGCGTGTTCGTTCCCCTGC
CTGTTGCTCTCCACACCATAGCAATCAGCGGAAGCGTCTCAGTGACGCAT
CTCTCCTCCCAAGAGACTCGCGCGTCGCGAGGCCACGCGCCCTAGTGCTC
GACTCCTGACTCACGACCCAGAGAGNGCTATGTAGCCTAGCTCCTCGCAC
GCTGTTCCTCTCTATCTGATTTACCAGTGAAGGACGATGACATGGTGACC
GAGGGCCTCACTCGTAGCATGCNTCACCCGCCCCCTACTTTCTCTTCGCT
GATCCATGCTGATACTATTACTGCTTGGCAGCCTCTATATGCGTCACCAC
ATTATCTTGTATTCGACCTGATATGGCTAACCTCATATACCAAATACCAT
ATAGATTGGATGAANATCTATTTATCAACACTGAACGGTATCGCCTACGT
CGTATTTCCTACTCAGCTATGATCCTGCTATTTTCTAACTCGCACGTGCA
ATATCTTATACGATTTTCAGCGCCATTGTGTATCTGTGCATATGAGCGCA
TGCTTCATGAGATAGAACTCGCCTGTGTTCTCTTAGAACTTCGTCTATTG
CNCGTCGATATATCACTCCTATGANGCGTCTCGCCATCGCTTGTCCTAGG
AGCTATTAGTCTATTTTGATCCGCCATCGATTCTCTCGTGTATCGTCGCA
GTTTTCTGTCTGTCTTATTCGAGTTTCATACCCGTCCGTATGTATCATGA
CCNTCAAGTCCCATCACTATGTATATAGATATATACTATGTATACTATCT
CAATGTTACTAACTAGCCTCTCTATTCTTCATTATCAAACCACGCATCTC
AAATTTTTCACTCCGCGTCAGTATAGCTTTTTCTACATTATCCCGACACT
GATTTACCTTATATTCGTCCTACACTGTGTTCACTACTTATCATTATAGT
AGAACTACAACAACTTCCTGTGTGTCACACTAACTTTGCACAGTGATTCG
CGTTTNGTTACATTACACATTGTTCTATCCTATTATCGAGCTATTCATCA
CCATTGCTCTCACGCGCGCGTCCAGTAGATTTACACAATGTGCTGTACTA
TATTCTCGCCCGCCATACCTTTTTCGCTGTCTTATGAGANTGAGCGCTTC
ATCTCACTTAAGCCGCTGCATCGTGTTGTACCTATATCTTAGCATTACTC
TATCTCCGTCTCATCGCTGGTAGTATGGTATGCCTCCTACTACGCATAGA
TACGATACCTCAGCGTCATCATCATATCACTGAGCTNCATANACTTTCTT
CACGCGATATATATATTATCGTGCTGTTTGGTCCTGCCNCGTCTCTATAT
GCGGCATTTCGTCTGATCGNCGTGTCGTATNGTCTATGCACATGTGTACT
GCACGTTACGTTCTCATCCTTTAATCGTTTAGATTATTAAGTTCTACANA
TTCGATCGTCTNCTTCCACTCACACTATAAATCATCN

NNNNNCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAGTAATAAAGAAAACG
AGCAGATAATGCTTGGTGAAGACTTTTAAGGCAAGATTTTTGGAGCACAC
TGGAAGCTTGAGCAGTTTTTATAGTTTTAGGAAAAGCTGGAGAGAAAGAA
ATTAAGATGGGACATAGCACAATAAAGATTTTATACAGCTTTTGCAGAGG
AGCCAAATTCACTTTTGGCACTTAAGTTGGACTGCTCACAACCACCTGTA
ACTCCTTCTCCTGGGGACTCCAACAGTTTCTTCTGAACTTTGCTGGGACA
ACCTGCTCCCCTATGTGCATAGACCCACATACAGACAAATGTATACACAT
AATTAAAGATTTAAAAAACAAAACAAAACAATGGAATAGCTGAATAAGGC
AAGATGGTAAGAAAACCAACAGGAAATTAGCATGGGAGTTTAGGACACAC
TCAGTGTAACATTAGGAGTCACAGTTGTCAGGAATTCAACAAGACTGCCT
TAACAGCTGGGCAACAAAGGCGGATTTCTGAGCTCNAAGGCCAGCCTGGN
CTACAAAGNAAGNTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCT
CGAAAAACCCNTNNNAAANANAAANTAAAANAAAGACTGCCCTTATCAGT
AAAACTGTTGCCTGGCCTGAAACCTTTTCCTTACCCTTCCTTTTTCTAAA
GGTTCCAACCCTGCCCCCCCCGGTAATGGTATTCCTTCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no515_h21.g1 MSMg01no515_h21.g1 CHROMAT_FILE:
MSMg01no515_h21.g1 PHD_FILE: MSMg01no515_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:46:50 2005
         (476 letters)



>mm_chr19_41607876_41608752
          Length = 877

 Score =  915 bits (473), Expect = 0.0
 Identities = 476/477 (99%), Gaps = 1/477 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagagtaataaagaaaacgagcagataatgcttggtgaagacttttaaggcaagattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aagagtaataaagaaaacgagcagataatgcttggtgaagacttttaaggcaagattttt 260

                                                                       
Query: 61  ggagcacactggaagcttgagcagtttttatagttttaggaaaagctggagagaaagaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagcacactggaagcttgagcagtttttatagttttaggaaaagctggagagaaagaaa 320

                                                                       
Query: 121 ttaagatgggacatagcacaataaagattttatacagcttttgcagaggagccaaattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaagatgggacatagcacaataaagattttatacagcttttgcagaggagccaaattca 380

                                                                       
Query: 181 cttttggcacttaagttggactgctcacaaccacctgtaactccttctcctggggactcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttttggcacttaagttggactgctcacaaccacctgtaactccttctcctggggactcc 440

                                                                       
Query: 241 aacagtttcttctgaactttgctgggacaacctgctcccctatgtgcatagacccacata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacagtttcttctgaactttgctgggacaacctgctcccctatgtgcatagacccacata 500

                                                                       
Query: 301 cagacaaatgtatacacataattaaagatttaaaaaacaaaacaaaacaatggaatagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagacaaatgtatacacataattaaagatttaaaaaacaaaacaaaacaatggaatagct 560

                                                                       
Query: 361 gaataaggcaagatggtaagaaaaccaacaggaaattagcatgggagtttaggacacact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaataaggcaagatggtaagaaaaccaacaggaaattagcatgggagtttaggacacact 620

                                                                    
Query: 421 cagtgtaacattaggagtcacagttgtcaggaattcaacaagactgccttaa-cagc 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 cagtgtaacattaggagtcacagttgtcaggaattcaacaagactgccttaagcagc 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 877
Length adjustment: 10
Effective length of query: 466
Effective length of database: 867
Effective search space:   404022
Effective search space used:   404022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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