Query= MSMg01no516_a17.b1 MSMg01no516_a17.b1 CHROMAT_FILE:
MSMg01no516_a17.b1 PHD_FILE: MSMg01no516_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:37 2005
(683 letters)
>mm_chr19_40838777_40839862
Length = 1086
Score = 1203 bits (622), Expect = 0.0
Identities = 667/684 (97%), Gaps = 7/684 (1%)
Strand = Plus / Plus
Query: 5 gaattctgtgctgcctagagcaacatgccgagcctctcttaaaacccaaggaaaaataaa 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgctggctagagcaacatgccgagcctctcttaaaacccaaggaaaaataaa 264
Query: 65 aatgatcctgcaattctattttattacttaccctaagtgtatagtttttagaattaagag 124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 265 aatgatcctgcaattctattttattacttaccctaagtgtata-tttttagaatt-agag 322
Query: 125 gggtatgttttactgcatgatatatttgaatgatactttgttcaatacacaaagatttta 184
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gagtatgttttactgcatgatatatttgaatgatactttgttcaatacacaaagatttta 382
Query: 185 aattacgtagtcacctgaagcaatctaatttattcagtttttgtgagcagatccattcat 244
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 383 aattatgtagtcacctgaagcaatctaatttattcagtttttgtgagcagatccatccat 442
Query: 245 actcacgagaggcacttatcaacaataatatatgttttcatactgaaacccagattttaa 304
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 443 actcacgagaggcactgatcaacaataatatatgttttcatactgaaaaccagattttaa 502
Query: 305 aacaacttatataaataagcctgtatttcagaattttactccaaccacttggccatagac 364
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aacaatttatataaataagcctgtatttcagaattttactccaaccacttggccatagac 562
Query: 365 ttctttctttcctcttcattattttctattaaatactttgtagaaaatggtttctctgct 424
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 563 ttctttctttcctcttcgttattttctcttaaatactttgtagaaaatggtttctctgct 622
Query: 425 tttcaggtagtgctgctttggggg--tgg---tggaaaccaaacagaggaggtttgaagg 479
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 623 tttcaggtagtgctgctttgggggggtgggggtggaaaccaaacagaggaggtttgaagg 682
Query: 480 ccacgtgggtcttcccatatcaggcctgcgtctgaaccttttcactagggtggaaggggc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccacgtgggtcttcccatatcaggcctgcgtctgaaccttttcactagggtggaaggggc 742
Query: 540 ccaagttattctgtttcagcaacattcaccggagaattgaacagtgagctatagaaaata 599
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 743 ccaagttattctgtttcagcaacattcactggagaattgaacagtgagctatagaaaata 802
Query: 600 ccacataacattaaccttaaatgagttcctctttattcagccaaaccttatcttattaaa 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ccacataacattaaccttaaatgagttcctctttattcagccaaaccttatcttattaaa 862
Query: 660 ttatatatttataatttatatata 683
||||||||||||||||||||||||
Sbjct: 863 ttatatatttataatttatatata 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1086
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1076
Effective search space: 724148
Effective search space used: 724148
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_a17.g1 MSMg01no516_a17.g1 CHROMAT_FILE:
MSMg01no516_a17.g1 PHD_FILE: MSMg01no516_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:37 2005
(617 letters)
>mm_chr19_41005022_41006038
Length = 1017
Score = 1015 bits (525), Expect = 0.0
Identities = 539/545 (98%), Gaps = 3/545 (0%)
Strand = Plus / Minus
Query: 1 cactggtttttgcaagagcactgagtgagtggctcaggggagggagtaaaagtgaaagga 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cactggtttttgcaagagcaccgagtgagtggctcaggggagggagtaaaagtgaaagga 486
Query: 61 tctgaaagtcccggccatactcctctccttcacagggtatcactcagatggccagatgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tctgaaagtcccggccatactcctctccttcacagggtatcactcagatggccagatgct 426
Query: 121 aaaacacaactatttcatttgagaagttgtccagtgttatgaatatatcgttattcaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aaaacacaactatttcatttgagaagttgtccagtgttatgaatatatcgttattcaatg 366
Query: 181 tggagatcttggaagtcatccaaacaatcaataaaacgtttaaattgctttgtttccaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tggagatcttggaagtcatccaaacaatcaataaaacgtttaaattgctttgtttccaga 306
Query: 241 tagctgtctgtacttaacaggttaaggggcacagtgaagacaatagacaccagttccata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tagctgtctgtacttaacaggttaaggggcacagtgaagacaatagacaccagttccata 246
Query: 301 aaccatgcaaccattgcaggccaattactttaaacatgatacatggccgggtagtggtgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aaccatgcaaccattgcaggccaattactttaaacatgatacatggccgggtagtggtgg 186
Query: 361 tgcacacctttaatcccagctcttgggaggcagaggcaggcagatttcggagtttgaggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tgcacacctttaatcccagctcttgggaggcagaggcaggcagatttcggagtttgaggc 126
Query: 421 cagcctggtctacaaagtgagttctaggacagccagggctatacagagaaaccctgtctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cagcctggtctacaaagtgagttctaggacagccagggctatacagagaaaccctgtctt 66
Query: 481 ggaaaaacaaaaacaaaaa---ccaagaacaacaaaaaagataaatgtacttactgttga 537
||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 65 ggaaaaaaaaaaaaaaaaaaaaccaagaacaacaaaaaagataaatgtacttactgttga 6
Query: 538 ctatg 542
|||||
Sbjct: 5 ctatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|