BAC Information

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BAC

Clone NameMSMg01-516A17
Chromosome19 (Build37)
Map Location 40,838,981 - 41,005,566
singlet/doubletdoublet
Overlap geneEG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk
Upstream geneCyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923, Pdlim1, LOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720
Downstream geneLOC100043155, Dntt, Tmem10, Tll2, Tm9sf3, Pik3ap1, LOC100043167, EG627352, Lcor, AI606181, Slit1, Arhgap19, Frat1, Frat2, Rrp12, LOC100042609, Pgam1, Exosc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-516A17.T7 (MSMg01no516_a17.b1)MSMg01-516A17.TJ (MSMg01no516_a17.g1)
ACCAG588136AG588137
length735739
length of high quality
(start - end)
683 (53 - 735)617 (85 - 701)
definitionCHROMAT_FILE: MSMg01no516_a17.b1 PHD_FILE: MSMg01no516_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:37 2005CHROMAT_FILE: MSMg01no516_a17.g1 PHD_FILE: MSMg01no516_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:47:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,838,981 - 40,839,662)(41,005,022 - 41,005,566)
sequence
NNCCTCATCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGTGCTGCCTAGAGCAACATGCCGAGCCTCTCTTAAAA
CCCAAGGAAAAATAAAAATGATCCTGCAATTCTATTTTATTACTTACCCT
AAGTGTATAGTTTTTAGAATTAAGAGGGGTATGTTTTACTGCATGATATA
TTTGAATGATACTTTGTTCAATACACAAAGATTTTAAATTACGTAGTCAC
CTGAAGCAATCTAATTTATTCAGTTTTTGTGAGCAGATCCATTCATACTC
ACGAGAGGCACTTATCAACAATAATATATGTTTTCATACTGAAACCCAGA
TTTTAAAACAACTTATATAAATAAGCCTGTATTTCAGAATTTTACTCCAA
CCACTTGGCCATAGACTTCTTTCTTTCCTCTTCATTATTTTCTATTAAAT
ACTTTGTAGAAAATGGTTTCTCTGCTTTTCAGGTAGTGCTGCTTTGGGGG
TGGTGGAAACCAAACAGAGGAGGTTTGAAGGCCACGTGGGTCTTCCCATA
TCAGGCCTGCGTCTGAACCTTTTCACTAGGGTGGAAGGGGCCCAAGTTAT
TCTGTTTCAGCAACATTCACCGGAGAATTGAACAGTGAGCTATAGAAAAT
ACCACATAACATTAACCTTAAATGAGTTCCTCTTTATTCAGCCAAACCTT
ATCTTATTAAATTATATATTTATAATTTATATATA
NNTTTTTTCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTGGTTTTTGCAAG
AGCACTGAGTGAGTGGCTCAGGGGAGGGAGTAAAAGTGAAAGGATCTGAA
AGTCCCGGCCATACTCCTCTCCTTCACAGGGTATCACTCAGATGGCCAGA
TGCTAAAACACAACTATTTCATTTGAGAAGTTGTCCAGTGTTATGAATAT
ATCGTTATTCAATGTGGAGATCTTGGAAGTCATCCAAACAATCAATAAAA
CGTTTAAATTGCTTTGTTTCCAGATAGCTGTCTGTACTTAACAGGTTAAG
GGGCACAGTGAAGACAATAGACACCAGTTCCATAAACCATGCAACCATTG
CAGGCCAATTACTTTAAACATGATACATGGCCGGGTAGTGGTGGTGCACA
CCTTTAATCCCAGCTCTTGGGAGGCAGAGGCAGGCAGATTTCGGAGTTTG
AGGCCAGCCTGGTCTACAAAGTGAGTTCTAGGACAGCCAGGGCTATACAG
AGAAACCCTGTCTTGGAAAAACAAAAACAAAAACCAAGAACAACAAAAAA
GATAAATGTACTTACTGTTGACTATGGACTTTTGTATGCACGATGCACTT
TGTTCCATGGTCTGTGTTATAGCCCTTTAATCTTTCATTTAAAACTGGGA
TAATTTTCAAACAAACTTTCTGACATGCTTGAATGAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no516_a17.b1 MSMg01no516_a17.b1 CHROMAT_FILE:
MSMg01no516_a17.b1 PHD_FILE: MSMg01no516_a17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:37 2005
         (683 letters)



>mm_chr19_40838777_40839862
          Length = 1086

 Score = 1203 bits (622), Expect = 0.0
 Identities = 667/684 (97%), Gaps = 7/684 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtgctgcctagagcaacatgccgagcctctcttaaaacccaaggaaaaataaa 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtgctggctagagcaacatgccgagcctctcttaaaacccaaggaaaaataaa 264

                                                                       
Query: 65  aatgatcctgcaattctattttattacttaccctaagtgtatagtttttagaattaagag 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct: 265 aatgatcctgcaattctattttattacttaccctaagtgtata-tttttagaatt-agag 322

                                                                       
Query: 125 gggtatgttttactgcatgatatatttgaatgatactttgttcaatacacaaagatttta 184
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gagtatgttttactgcatgatatatttgaatgatactttgttcaatacacaaagatttta 382

                                                                       
Query: 185 aattacgtagtcacctgaagcaatctaatttattcagtttttgtgagcagatccattcat 244
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 383 aattatgtagtcacctgaagcaatctaatttattcagtttttgtgagcagatccatccat 442

                                                                       
Query: 245 actcacgagaggcacttatcaacaataatatatgttttcatactgaaacccagattttaa 304
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 443 actcacgagaggcactgatcaacaataatatatgttttcatactgaaaaccagattttaa 502

                                                                       
Query: 305 aacaacttatataaataagcctgtatttcagaattttactccaaccacttggccatagac 364
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aacaatttatataaataagcctgtatttcagaattttactccaaccacttggccatagac 562

                                                                       
Query: 365 ttctttctttcctcttcattattttctattaaatactttgtagaaaatggtttctctgct 424
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 563 ttctttctttcctcttcgttattttctcttaaatactttgtagaaaatggtttctctgct 622

                                                                       
Query: 425 tttcaggtagtgctgctttggggg--tgg---tggaaaccaaacagaggaggtttgaagg 479
           ||||||||||||||||||||||||  |||   ||||||||||||||||||||||||||||
Sbjct: 623 tttcaggtagtgctgctttgggggggtgggggtggaaaccaaacagaggaggtttgaagg 682

                                                                       
Query: 480 ccacgtgggtcttcccatatcaggcctgcgtctgaaccttttcactagggtggaaggggc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccacgtgggtcttcccatatcaggcctgcgtctgaaccttttcactagggtggaaggggc 742

                                                                       
Query: 540 ccaagttattctgtttcagcaacattcaccggagaattgaacagtgagctatagaaaata 599
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 743 ccaagttattctgtttcagcaacattcactggagaattgaacagtgagctatagaaaata 802

                                                                       
Query: 600 ccacataacattaaccttaaatgagttcctctttattcagccaaaccttatcttattaaa 659
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 ccacataacattaaccttaaatgagttcctctttattcagccaaaccttatcttattaaa 862

                                   
Query: 660 ttatatatttataatttatatata 683
           ||||||||||||||||||||||||
Sbjct: 863 ttatatatttataatttatatata 886


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1086
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1076
Effective search space:   724148
Effective search space used:   724148
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no516_a17.g1 MSMg01no516_a17.g1 CHROMAT_FILE:
MSMg01no516_a17.g1 PHD_FILE: MSMg01no516_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:47:37 2005
         (617 letters)



>mm_chr19_41005022_41006038
          Length = 1017

 Score = 1015 bits (525), Expect = 0.0
 Identities = 539/545 (98%), Gaps = 3/545 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cactggtttttgcaagagcactgagtgagtggctcaggggagggagtaaaagtgaaagga 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 545 cactggtttttgcaagagcaccgagtgagtggctcaggggagggagtaaaagtgaaagga 486

                                                                       
Query: 61  tctgaaagtcccggccatactcctctccttcacagggtatcactcagatggccagatgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tctgaaagtcccggccatactcctctccttcacagggtatcactcagatggccagatgct 426

                                                                       
Query: 121 aaaacacaactatttcatttgagaagttgtccagtgttatgaatatatcgttattcaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aaaacacaactatttcatttgagaagttgtccagtgttatgaatatatcgttattcaatg 366

                                                                       
Query: 181 tggagatcttggaagtcatccaaacaatcaataaaacgtttaaattgctttgtttccaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tggagatcttggaagtcatccaaacaatcaataaaacgtttaaattgctttgtttccaga 306

                                                                       
Query: 241 tagctgtctgtacttaacaggttaaggggcacagtgaagacaatagacaccagttccata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tagctgtctgtacttaacaggttaaggggcacagtgaagacaatagacaccagttccata 246

                                                                       
Query: 301 aaccatgcaaccattgcaggccaattactttaaacatgatacatggccgggtagtggtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 aaccatgcaaccattgcaggccaattactttaaacatgatacatggccgggtagtggtgg 186

                                                                       
Query: 361 tgcacacctttaatcccagctcttgggaggcagaggcaggcagatttcggagtttgaggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tgcacacctttaatcccagctcttgggaggcagaggcaggcagatttcggagtttgaggc 126

                                                                       
Query: 421 cagcctggtctacaaagtgagttctaggacagccagggctatacagagaaaccctgtctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 cagcctggtctacaaagtgagttctaggacagccagggctatacagagaaaccctgtctt 66

                                                                       
Query: 481 ggaaaaacaaaaacaaaaa---ccaagaacaacaaaaaagataaatgtacttactgttga 537
           ||||||| ||||| |||||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 65  ggaaaaaaaaaaaaaaaaaaaaccaagaacaacaaaaaagataaatgtacttactgttga 6

                
Query: 538 ctatg 542
           |||||
Sbjct: 5   ctatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)