Query= MSMg01no516_j17.b1 MSMg01no516_j17.b1 CHROMAT_FILE:
MSMg01no516_j17.b1 PHD_FILE: MSMg01no516_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:24 2005
(675 letters)
>mm_chr19_38282640_38283713
Length = 1074
Score = 1212 bits (627), Expect = 0.0
Identities = 658/671 (98%), Gaps = 6/671 (0%)
Strand = Plus / Plus
Query: 5 gaattcagaaggctggagagatggctcggtatgtaagagcactggctgctactgcagacg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gaattcagaaggctggagagatggctcggtatgtaagagcactggctgctactgcagacg 269
Query: 65 accaggcttaagtctcagcccctatgtggtggctcacaactacctacaactctagctcag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 accaggcttaagtctcagcccctatgtggtggctcacaactacctacaactctagctcag 329
Query: 125 aggagctgacatcttccttcctccacaggcactgcacacatgtggtacacagatagacat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aggagctgacatcttccttcctccacaggcactgcacacatgtggtacacagatagacat 389
Query: 185 gcaggcaaaacagccatacacattttttaaaggggaaaaatataaataattcagataaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gcaggcaaaacagccatacacattttttaaaggggaaaaatataaataattcagataaaa 449
Query: 245 cattcaatttcttattaatattcaagttaagttttaaatcatctatttcttaatttttca 304
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 450 cattcaatttcttattaatattcaagtt-----ttaaatcatccatttcttaatttttca 504
Query: 305 aatttatatattaaattcatacaaaaattcaaaaaaatgtcaaaacattctagttaaaat 364
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatttatatcttaaattcatacaaaaattcaaaaaaatgtcaaaacattctagttaaaat 564
Query: 365 gcaaataaaaataaaattccccatatctatgtggggggagtagaataaataagtatcaaa 424
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 565 gcaaataaaaataaaattccccatgtctatg-ggggggagtagaataaataagtatcaaa 623
Query: 425 aaaaggaagtaaaaaatttaaagtgactccctttcattttatgttttggtgtatatctgt 484
||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 624 aaaaggaagtaaaaattttaaagtgactccctttcattttatgctttagtgtatatctgt 683
Query: 485 gtctagagattacatgccatcccacattgtcttgcagtgtctactgaagcacaaagtcaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtctagagattacatgccatcccacattgtcttgcagtgtctactgaagcacaaagtcaa 743
Query: 545 ctgtattactagcaagagttttccaagccttttctttcattcattcatctatttaaggaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctgtattactagcaagagttttccaagccttttctttcattcattcatctatttaaggaa 803
Query: 605 ctagttattggacttgtatttcaggactggagaaatggctcagctgttaaagagcgctta 664
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ctacttattggacttgtatttcaggactggagaaatggctcagctgttaaagagcgctta 863
Query: 665 gtgctgctgca 675
|||||||||||
Sbjct: 864 gtgctgctgca 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1074
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1064
Effective search space: 707560
Effective search space used: 707560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_j17.g1 MSMg01no516_j17.g1 CHROMAT_FILE:
MSMg01no516_j17.g1 PHD_FILE: MSMg01no516_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:24 2005
(571 letters)
>mm_chr19_38356306_38357273
Length = 968
Score = 977 bits (505), Expect = 0.0
Identities = 543/571 (95%), Gaps = 26/571 (4%)
Strand = Plus / Minus
Query: 1 agcatcccatagtcccaagttgccagaagaaatagcttccatcccttacgttaagtcaaa 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 556 agcatcccatagtcccaagttgccggaagaaatagcttccatcccttacgttaagtcaaa 497
Query: 61 agtaagacaggctggaaagtggataccagtgagcatcccttgcctatgcctgtcacagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 agtaagacaggctggaaagtggataccagtgagcatcccttgcctatgcctgtcacagag 437
Query: 121 atgaaagataggatttcttctaaaatttttgttggccttttcagtacttacttttagaac 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 atgaaagataggat---ttctaaaatttttgttggccttttcagtacttacttttagaac 380
Query: 181 ttgtgctagtaaccattccattgtaaattttaaacaaatatttgttgaacaaagagacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ttgtgctagtaaccattccattgtaaattttaaacaaatatttgttgaacaaagagacat 320
Query: 241 ttgctttacattgcattctagtcactgctaggttaggatattgaatataatcttaaagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttgctttacattgcattctagtcactgctaggttaggatattgaatataatcttaaagca 260
Query: 301 aggacctgcctttatttgcttttgcatccccaactctatcccaattcctgtttttttttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aggacctgcctttatttgcttttgcatccccaactctatcccaattcctgtttttttt-- 202
Query: 361 gttttggttttttttttttgtttttcatgtttgctgaactacatttcaaagactaaaatc 420
||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 --------------------tttttcatgtttgctgaactacatttcaaagactaaaatc 162
Query: 421 tctggctaaaactataactacaaagcaacattttctaaggaaagaagtcaaaattcggca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tctggctaaaactataactacaaagcaacattttctaaggaaagaagtcaaaattcggca 102
Query: 481 gagtgcattctgcatgactaacagaaaaaacaaacaaacaaacaaac-tacaacaacaaa 539
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 101 gagtgcattctgcatgactaacagaaaaaacaaacaaacaaacaaacaaacaacaacaaa 42
Query: 540 aaacccagctgggggctggcgagatggctta 570
|||||||||||||||||||||||||||||||
Sbjct: 41 aaacccagctgggggctggcgagatggctta 11
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 968
Length adjustment: 10
Effective length of query: 561
Effective length of database: 958
Effective search space: 537438
Effective search space used: 537438
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
