Query= MSMg01no517_g14.b1 MSMg01no517_g14.b1 CHROMAT_FILE:
MSMg01no517_g14.b1 PHD_FILE: MSMg01no517_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:29 2005
(717 letters)
>mm_chr19_40676986_40678102
Length = 1117
Score = 951 bits (492), Expect = 0.0
Identities = 511/518 (98%), Gaps = 2/518 (0%)
Strand = Plus / Minus
Query: 200 ggttctccatgttcacccattttattgcaaatgtcaaggttccattttctcttttatgag 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1117 ggttctccatgttcacccattttattgcaaatgtcaaggttccattttctcttttatgag 1058
Query: 260 cgaatgaacatattccattgtatgggtaccacattttcttcagccttttattccatgata 319
|||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 1057 cgaatgaacatattccgttgtatgggtaccacattttcttc--ccttttattccacgata 1000
Query: 320 ggaacctcagtgaggagcctgtgttggttgttgcgagtggcagtgcagctacctctctga 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 999 ggaacctcagtgaggagcctgtgttggttgttgcgagtggcagtgcagctacctctctga 940
Query: 380 cagggtggtttcattttcactgaatagttgtacacccaagaatagagtagctagaccaga 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 cagggtggtttcattttcactgaatagttgtacacccaagaatagagtagctagaccaga 880
Query: 440 tgttagatgtatctttagttttcagaaggctcttcatcctgttgttcatttttgaataca 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 tgttagatgtatctttagttttcagaaggctcttcatcctgttgttcatttttgaataca 820
Query: 500 actttgtaaagattaagaacatttatatggcctggttttgcactttctccaagccatatg 559
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct: 819 actttgtaaagattaagaacatttatatggcctggttttgcactttctctaagccaaatg 760
Query: 560 ggcctctgtattattacacaacgctttagtaacaatagctgctcaagagatgctgagaaa 619
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 759 ggcctctgtattattacacaatgctttagtaacaatagctgctcaagagatgctgagaaa 700
Query: 620 agatgcatcagcagttaacagcgcccattggtagctcacaactgcctataactctacctg 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 agatgcatcagcagttaacagcgcccattggtagctcacaactgcctataactctacctg 640
Query: 680 cagggaatctgacactctctctagcctccatgggcatc 717
||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cagggaatctgacactctctctagcctccatgggcatc 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space: 782649
Effective search space used: 782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no517_g14.g1 MSMg01no517_g14.g1 CHROMAT_FILE:
MSMg01no517_g14.g1 PHD_FILE: MSMg01no517_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:49:29 2005
(687 letters)
>mm_chr19_40502408_40503493
Length = 1086
Score = 1172 bits (606), Expect = 0.0
Identities = 670/702 (95%), Gaps = 20/702 (2%)
Strand = Plus / Plus
Query: 1 cacactcatccctacaactaggacatccattagcaaccaatacaacaaaatactccaaga 60
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 188 cacactcatccctacaagtaggatatccattagcaaccaatacaacaaaatactccaaga 247
Query: 61 gaagaaaaactattttctcaacatcagtcagagagagtaatgcaggagctagcgggttgt 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 248 gaagaaaaactattttctcaacatcagtcagagagagtaatgcaggagttagcgggttgt 307
Query: 121 accacgaagtctttggattccccaccccctgctcttcgctatagtagaggtttctcaaac 180
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 308 accaccaagtctttggattccccaccccctgctcttagctatagtagaggtttctcaaac 367
Query: 181 ctaggcctaccagttagaatcatttaagcttgttaca---caacagacagtagaaatcac 237
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 368 ctaggcctaccagttagaatcatttaagcttgttacaacacaacagacagtagaaatcac 427
Query: 238 aacagacttcctaacttagtagttatggtgtacatttctagctaatatatcgctgttgct 297
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 428 aacagacttcctaacttagtagttatggtgtacatttctagctagtatatcgctgttgct 487
Query: 298 gcaaaggccctctgttgcagcgagacagggttgatagcaat----------aatagaatt 347
|||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 488 gcaaaggccctctgctgcagcgagacagggttgatagcaattgccctaaataatagaatt 547
Query: 348 agtgggaaagccaatataaagatgcaaaaaggacaagagctccaacaactcacagttctt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 agtgggaaagccaatataaagatgcaaaaaggacaagagctccaacaactcacagttctt 607
Query: 408 gagaaaacactctatctaattaccaaacaagtagtgcgaggccaaagaactcacagccgg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 gagaaaacactctatctaattaccaaacaagtagtgcgaggccaaagaactcacagccgg 667
Query: 468 gcagtgggaactgaggtagatcttaaaggatagagagatcggacagaagaaagagaagcc 527
|||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||
Sbjct: 668 gcagtgggaactgaggtagatcttaaaggacagagagatcagacagaaga----gaagcc 723
Query: 528 tcaggtgactat---gtttgtaagatgcccaggacttcagagtgggaagggcctggcctg 584
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tcaggtgactataatgtttgtaagatgcccaggacttcagagtgggaagggcctggcctg 783
Query: 585 ctagtcttctagttcttacatttgcataagggtgtgactgctatttcaaatattcacagc 644
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 cttgtcttctagttcttacatttgcataagggtgtgactgctatttcaaatattcacagc 843
Query: 645 aaaacactttggtaactagagtagctgctatccaaataagta 686
||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 844 aaaacactttggtaaatagagtagctgctatctaaataagta 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1086
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1076
Effective search space: 728452
Effective search space used: 728452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
