Query= MSMg01no518_f19.b1 MSMg01no518_f19.b1 CHROMAT_FILE:
MSMg01no518_f19.b1 PHD_FILE: MSMg01no518_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:44 2005
(710 letters)
>mm_chr19_50062750_50063859
Length = 1110
Score = 1350 bits (698), Expect = 0.0
Identities = 704/706 (99%)
Strand = Plus / Plus
Query: 5 gaattcaagagcctatgttactaacaatacagcagcagcagcaacaacagcagcagtggc 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagagcccatgttactaacaatacagcagcagcagcaacaacagcagcagtggc 264
Query: 65 agcaaataaccaggaaaatcaagatgagaatgaaaagaagtttagaggcaaactaatcac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcaaataaccaggaaaatcaagatgagaatgaaaagaagtttagaggcaaactaatcac 324
Query: 125 ttccaactgaagataacatttggagcaactctgtatttctaaacttaatggtgagagaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttccaactgaagataacatttggagcaactctgtatttctaaacttaatggtgagagaca 384
Query: 185 gagacatagatctcaaaggaaaggattatcaactacaataaataatataaaacaggcatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagacatagatctcaaaggaaaggattatcaactacaataaataatataaaacaggcatc 444
Query: 245 cccacaccctggtaactcagacaaggacatcctcagcagaacaactctaaatctgagatg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cccacaccctggtaactcagacaaggacatcctcagcagaacaactctaaatctgagatg 504
Query: 305 gctgtaaacattcaaatatacaagtcacccaggaactaccaaatgtaatgttgcattctt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctgtaaacattcaaatatacaagtcacccaggaactaccaaatgtaatgttgcattctt 564
Query: 365 gatagctataaacaatttagatttattcagcatgacagtgcaaatgtctaagccactcct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gatagctataaacaatttagatttattcagcatgacagtgcaaatgtctaagccactcct 624
Query: 425 aaataggcctagacgtaggactgtcatcttaatgatatatggcaggactagaatttcaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaataggcctagacgtaggactgtcatcttaatgatatatggcaggactagaatttcaaa 684
Query: 485 ataatttcaattactggatgtgtttaaaaaaaaagcactttgcagcttttaggaaaattt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataatttcaattactggatgtgtttaaaaaaaaagcactttgcagcttttaggaaaattt 744
Query: 545 acaaatagactttaaacacatctaatgcagagcaggatttcacttccttactgcaattac 604
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acaaatagactttaagcacatctaatgcagagcaggatttcacttccttactgcaattac 804
Query: 605 aatttcattctaacctgtagaagcgagctggagaatagatgcacggatgaggacaaaatg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aatttcattctaacctgtagaagcgagctggagaatagatgcacggatgaggacaaaatg 864
Query: 665 ctcccaggaaatttgggataaacggggatcaaacttaagtctgttc 710
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ctcccaggaaatttgggataaacggggatcaaacttaagtctgttc 910
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 710
Length of database: 1110
Length adjustment: 10
Effective length of query: 700
Effective length of database: 1100
Effective search space: 770000
Effective search space used: 770000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no518_f19.g1 MSMg01no518_f19.g1 CHROMAT_FILE:
MSMg01no518_f19.g1 PHD_FILE: MSMg01no518_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:45 2005
(642 letters)
>mm_chr19_50199377_50200418
Length = 1042
Score = 861 bits (445), Expect = 0.0
Identities = 463/473 (97%), Gaps = 8/473 (1%)
Strand = Plus / Minus
Query: 1 aatggatcagtgaacattttttatgattgtgtatatggatacctaatggtctctttaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 aatggatcagtgaacattttttatgattgtgtatatggatacctaatggtctctttaaat 409
Query: 61 ttcattcataaggctgcaaacttcaatgtttgcatagatagattgtatttctattagcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ttcattcataaggctgcaaacttcaatgtttgcatagatagattgtatttctattagcca 349
Query: 121 tttgtctaaacctaggctgtttcagtttcttaagtatggaaagttaatgctacactgtgg 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tttgtctaaacttaggctgtttcagtttcttaagtatggaaagttaatgctacactgtgg 289
Query: 181 gctagttaatgagctcctgctgccatgagaaagtgattgaggagacaaatacaggctgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gctagttaatgagctcctgctgccatgagaaagtgattgaggagacaaatacaggctgag 229
Query: 241 cagataacaaaggaaatgtatgatttaaaataacaacaacaattaataataataataata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 cagataacaaaggaaatgtatgatttaaaataacaacaacaattaataataataataata 169
Query: 301 ataataataataatagatgtgaaactctaaaatcagggttctagtatggtcaggctctgt 360
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 atagtaata------gatgtgaaactctaaaatcagggttctagtatggtcaggctctgt 115
Query: 361 tgtgagctctctctacaaaataatgctttactaattaactatcctcacatggcaggcaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 tgtgagctctctctacaaaataatgctttactaattaactatcctcacatggcaggcaga 55
Query: 421 cagacagacagacagacagtcagagagagagagagagagatggagagagagag 473
|||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 54 cagacagacagacagacagtcagagagagagagagagaga--gagagagagag 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
