Query= MSMg01no518_p01.b1 MSMg01no518_p01.b1 CHROMAT_FILE:
MSMg01no518_p01.b1 PHD_FILE: MSMg01no518_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:30 2005
(584 letters)
>mm_chr19_45491212_45492196
Length = 985
Score = 1042 bits (539), Expect = 0.0
Identities = 573/587 (97%), Gaps = 7/587 (1%)
Strand = Plus / Plus
Query: 5 gaattcttg-aattccagacacattttgttgcaacatatcagtctctttattttctcatt 63
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgaaacaccagacacattttgttgcaacatatcagtctctttattttctcatt 264
Query: 64 ctttgatttagtagaaacctgtttagcacctccctctattttgcatagactttttaattt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttgatttagtagaaacctgtttagcacctccctctattttgcatagactttttaattt 324
Query: 124 ttttaagatttatttttaaat----tgtgtgtgtgtgtgtgtgtgtgtgtgtg--tgtgt 177
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 325 ttttaagatttatttttaaattatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgt 384
Query: 178 atgtatgtacacatgagtgagggtggaggcacaagattatgggtagaagacactagaagg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgtatgtacacatgagtgagggtggaggcacaagattatgggtagaagacactagaagg 444
Query: 238 agttagatttcctgggctggtggttgtaagttccctaatgtgggtgctaggaaaaaaact 297
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 445 agttagatttcctgggctggtggttgtaagctccctaatgtgggtgctaggaaaaaaact 504
Query: 298 ctggccccttgcaagaacggcaagtacttctaactgctgagccacatctccagcccttcc 357
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 505 ctggccccttgcaagaacggcaagtacttctaactgctgagccacatctccaacccttcc 564
Query: 358 tcgtagaaagatcattatatatttcttctgtatatgagagttttgtctgcttgtgtgcct 417
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcatagaaagatcattatatatttcttctgtatatgagagttttgtctgcttgtgtgcct 624
Query: 418 agtaccatcacaggtatcaggtcccctggaactggagttatagatggtttagagccacta 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agtaccatcacaggtatcaggtcccctggaactggagttatagatggtttagagccacta 684
Query: 478 tctgtggtgcccgggacccaagtcctttgcaagagtaatgagtactctgaacccaggagc 537
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 685 tctgtggtgcccaggacccaagtcctttgcaagagtaatgaatactctgaacccaggagc 744
Query: 538 catttctccagcccctcattccccacatattagatatgttttaaaag 584
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 catttctccagcccctcattccccacatattagatatgttttaaaag 791
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 985
Length adjustment: 10
Effective length of query: 574
Effective length of database: 975
Effective search space: 559650
Effective search space used: 559650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_p01.g1 MSMg01no518_p01.g1 CHROMAT_FILE:
MSMg01no518_p01.g1 PHD_FILE: MSMg01no518_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:30 2005
(672 letters)
>mm_chr19_45661476_45662547
Length = 1072
Score = 1151 bits (595), Expect = 0.0
Identities = 623/639 (97%), Gaps = 11/639 (1%)
Strand = Plus / Minus
Query: 45 aggcaggaggagccctctctcagagggctgtgtgctggaagcagtagtatcccaatcaaa 104
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 aggcaagaggagccctctctcagagggctgtgtgctggaagcagtagtatcccaatcaaa 1013
Query: 105 actgtactgtcacttaccagcctcatctaggacctctctgaactttgctttccacagtgg 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 actgtactgtcacttaccagcctcatctaggacctctctgaactttgctttccacagtgg 953
Query: 165 gaactgaaaaatgggaatgcagtgtgtccccaactccagaagtagttgtgactggatacc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 gaactgaaaaatgggaatgcagtgtgtccccaactccagaagtagttgtgactggatacc 893
Query: 225 tgaaaaatg-----------ccccaactgcctgacacctttgctttctccctcagaacca 273
||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 tgaaaaatgcccccccccccccccaactgcctgacacctttgctttctccctcagaacca 833
Query: 274 aagggtttgtgaggatctcgcctctcaattcccagaatacctgtggcctctggccagggt 333
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 aagggtttgtgaggatctcacctctcaattcccagaatacctgtggcctctggccagggt 773
Query: 334 agagggaactgccagccccacagcaaggaggatcttgccaggagggctgtggtttgggat 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 agagggaactgccagccccacagcaaggaggatcttgccaggagggctgtggtttgggat 713
Query: 394 ggcatttgtgccagcagcttcagtcagccacacagctgtagctcatgaccatcatctctg 453
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 712 ggcatttgtgccagcagcttcagtcagccacacagctgtagctcatgacaatcatctctg 653
Query: 454 cctgggcctgactcacagactgtggtctgagtacaccaccatggcctagcaaccaacatc 513
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 cctgggcctggctcgcagactgtggtctgagtacaccaccatggcctagcaaccaacatc 593
Query: 514 tcaactggatgatcttcaagctgcctgtggctgccttggaggcactagggtcaggatggt 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tcaactggatgatcttcaagctgcctgtggctgccttggaggcactagggtcaggatggt 533
Query: 574 gttctaaggggcactgccattttcatgaaatctctagatgtcatcaaccccaaacacaaa 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gttctaaggggcactgccattttcatgaaatctctagatgtcatcaaccccaaacacaaa 473
Query: 634 taagtataggcacagggctgggcagtggtggtgcacgcc 672
|||||||||||||||||||||||||||||||||||||||
Sbjct: 472 taagtataggcacagggctgggcagtggtggtgcacgcc 434
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
