Query= MSMg01no519_b15.b1 MSMg01no519_b15.b1 CHROMAT_FILE:
MSMg01no519_b15.b1 PHD_FILE: MSMg01no519_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:43 2005
(663 letters)
>mm_chr19_17681684_17682746
Length = 1063
Score = 1065 bits (551), Expect = 0.0
Identities = 617/653 (94%), Gaps = 23/653 (3%)
Strand = Plus / Minus
Query: 12 tatcttaac-tacagctgtagcccttcggtttcccgtgtgatttttgtaaatatttagga 70
||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 1056 tatcttaacatacagctgtagcccttcggtttcccatgtgattttcgtaaatatttagga 997
Query: 71 aaatgggtaattttggtctgcatcttgagttgttgtaaaattgctaggcagatagactga 130
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 996 aaatgggcaattttggtctgcatcttgagttgttgtaaaattgctaggcagatagactga 937
Query: 131 taagaaatgtagagtttataatgactctgaattctatgtgtgtgtgtgtgtgtgtgtgtg 190
|||||||||||||||||||||||||||||||||||| ||
Sbjct: 936 taagaaatgtagagtttataatgactctgaattcta----------------------tg 899
Query: 191 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgaaacctccaggggctgcaatgta 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgaaacctccaggggctgcaatgta 839
Query: 251 cttgctttcttttggtttcctagtataatagtttgaagtcatttgtttccattttgtcct 310
||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||
Sbjct: 838 cttgctttcttttggtttcttagtataatagtgtgaagtcatctgtttccattttgtcct 779
Query: 311 ttgaggtaacttcagagcataagctttgtgtccagatttgccccacagtccaatagaata 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ttgaggtaacttcagagcataagctttgtgtccagatttgccccacagtccaatagaata 719
Query: 371 tatcttagaagcctaaaatcctccatgagtaagtcacatatcacttgacatcacaggaca 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tatcttagaagcctaaaatcctccatgagtaagtcacatatcacttgacatcacaggaca 659
Query: 431 taactctatggtgcagatgtcctcgaatgttggaaagggctgttggttagtcattcagat 490
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 658 taactctatggtgcagatgtcctcgaatgttggaaagggctgttggttggtcattcagat 599
Query: 491 tgcaatcctgcaaaagacgtcagactaagctgtagagtaggaactaaaacctgacctgga 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tgcaatcctgcaaaagacgtcagactaagctgtagagtaggaactaaaacctgacctgga 539
Query: 551 agtcactcccgaaaccaagtgcattcgagtgagaaatatttaattgctctgatgtcactc 610
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 538 agtcactcccgaaaccaagtgcatttgagtgagaaatatttaattgctctggtgtcactc 479
Query: 611 attctagcttttcctttgcttcaatcctgactttttcaaaacctactcattaa 663
||||||||||| |||||||||||||| ||||||| ||| ||||||||||||||
Sbjct: 478 attctagctttacctttgcttcaatcttgactttctcagaacctactcattaa 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_b15.g1 MSMg01no519_b15.g1 CHROMAT_FILE:
MSMg01no519_b15.g1 PHD_FILE: MSMg01no519_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:43 2005
(690 letters)
>mm_chr19_17593642_17594731
Length = 1090
Score = 1265 bits (654), Expect = 0.0
Identities = 681/690 (98%)
Strand = Plus / Plus
Query: 1 taaggttgggactctagagaccaggctattccacccaaggtagcttcccctttccatggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaggttgggactctagagaccaggctattccacccaaggtagcttcccctttccatggc 260
Query: 61 tgggcagaggctgtgtcctctgttgctccagcatctggcaaatgtccactccttcttggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggcagaggctgtgtcctctgttgctccagcatctggcaaatgtccactccttcttggg 320
Query: 121 tccaactcttgctttaaatgccagggtactgaatttccctaactcatgcttcttttgagt 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 tccaactcttgctttaaatgccagggtactgaatttccctcactcatgcttcttttgagt 380
Query: 181 gtgttagtatcccttgactgtgacctcaatggcagggacagtgtcctaaagagcctttgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 gtgttagtatcccttgactgtgacctcaatggcagggacagtgtcctaaagagtctttgg 440
Query: 241 actctgtatacatctcagagctaaatataatgcaagtatttttgaccttctttgcgtgga 300
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 actctgcatacatctcagagctaaatataaagcaagtatttttgaccttctttgcgtgga 500
Query: 301 cgccacttactatgggttggatatgttttacagcatgtatgtgttggaaacttggtctcc 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctccacttactatgggttggatatgttttacagcatgtatgtgttggaaacttggtctcc 560
Query: 361 aaggtgataatgttgtgaagtagggtttaagatgaggggagtaagtagtgaggagtctta 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggtgataatgttgtgaagtaggggttaagatgaggggagtaagtagtgaggagtctta 620
Query: 421 cacaaatagctggattgatgatgtgatcttgggaagaagccataaaagcaggtctagctt 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 cacaaatagctggattgatgatgtgatcatgggaagaagccataaaagcaggtctagctt 680
Query: 481 tcttttgttctctctcttgtcttctactttcagcagtggggtgacccagcaccaaggcat 540
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcttttgttctctcccttgtcttctactttcagcagtggggtgacccagcaccaaggcat 740
Query: 541 taaccagaggccagtgtcatgtacatagatgtcccagttccgagtaacattcagccacag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaccagaggccagtgtcatgtacatagatgtcccagttccgagtaacattcagccacag 800
Query: 601 ctatattgtttataatttatccagtctcaagtattgtgttatagcagctccaaatgagcc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctatattgtttataatttatccagtctcaagtattgtgttatagcagctccaaatgagcc 860
Query: 661 aagacaccaatctgggaaacactttggaaa 690
|||||||| |||||||||||||||||||||
Sbjct: 861 aagacaccgatctgggaaacactttggaaa 890
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space: 734400
Effective search space used: 734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
