BAC Information

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BAC

Clone NameMSMg01-519C16
Chromosome19 (Build37)
Map Location 15,320,091 - 15,320,759
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667433, Tle4, EG433225, EG635497
Downstream genePomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519C16.T7 (MSMg01no519_c16.b1)MSMg01-519C16.TJ (MSMg01no519_c16.g1)
ACCAG590504AG590505
length742737
length of high quality
(start - end)
708 (35 - 742)669 (66 - 734)
definitionCHROMAT_FILE: MSMg01no519_c16.b1 PHD_FILE: MSMg01no519_c16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:48 2005CHROMAT_FILE: MSMg01no519_c16.g1 PHD_FILE: MSMg01no519_c16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATCCC
TAGTGACCATTTAAAAATCTGAACATGGGGGGGAGGCGACCTCAGCCTCA
GCAGCAGCGGTCGCCATCTTGGTTCCGGGACTCAGCAGAATTTAGGAAAT
TAGTCTGAACAGGTTAGAGGGTGCGCCAGAGAACCGGACAGCTTCTGGGA
CGGGCAGAAGCACAGAGCCGCTGAGGCAGCAGCCTGGGCGGGCCGCAGAT
AACCGGCCACCATCCGGACCAGAGGACAGGTGTCCGCCTGGCTCGGGAGA
CGGCCTCGGCCTCAGGAGCAGCGGTCACCATCTTGGTTCCAGGACTCCCT
GGAACTTAGGATTTTAGTCTGCACAGGTGAGAGTCTGCACCACAGAAGCT
GACAGCTTCTGGGAACTGCCAAAGCAACACAGCTTCTGAGAGAGGCCCTG
TTTTGGGCCTTCTTCTTCGACCAGGAGGAGGTCCAAAAACAAGATATCTG
CGTACCTTCCCTGTAAGAGAGCTTGCCAGCAGAGAGTGCTCTGAGCACTG
AAACTCAGAGGAGAGAATCTGTCTCCCAGGTCTGCTGAGAGACAGTAACA
GAATCACCAGAAGAACAATCTCTAAACAGAGTCAACTATAACTACTAACT
CCAGAGATTACCAGATGGCGAAAGGTAAACGTAGGAATCCTACTAACAGG
AACCAAGACCACTCACCATCATCAGAACCCAGTACTCCCACT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAGAGCAAGAAATAGCTACCAGCAGTTACATTTGGC
AAAAATTCAAAGCACTCAAGCAAGGATATGGAGGGAACTTTTATAGTTTA
AAAAAGGTCAGAGGCAAGCTTTAGAAATGCTCAAGTTGGAGTTGGTAAGT
GTAGGGATGCTAGAGGTAGCCAATAGTAGTGTAAAGTTTATGTAATTGAT
TTCAGGAACTTATGTGCATTTCTCTGCTTGATTCTGAGTTTCAATCAGGG
TGAAAAACAGAGTAGATGACAATTATGGATCACCTGGGCCATTTCAACCA
AGGTATAGTGTAGCTTGCTTGTGGAATGTTGCAGGGGTTGCATATTTCAT
TTTAACTCACATTCTGGATACTTTCTGTTGGTATAGTCAAAATTCAATCC
CTCTTCCCCATTAGAGTGCTGTACCATGTTTGAGAAGTGATACCATTCAG
AAAGAGCTAAAGAGCTAGATCATCTTTAAGCCTTGTGCTGTTGTATCTCA
GTAACTGTGTCATGAAGTCCTTTTAAACTCCTTTGCTGTATCATTATAGC
AAATATCTGATGAGCAAACAACTTCATGGAATCAATCATGGTCAAAGAAA
CCAGCACTAGAACACTGATGGAAATAAAGAACAATGCAGAGTCTTGGTAA
AGTCCTAGGATCAAGGAACCTCATTTACTCAACTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_c16.g1 MSMg01no519_c16.g1 CHROMAT_FILE:
MSMg01no519_c16.g1 PHD_FILE: MSMg01no519_c16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:48 2005
         (669 letters)



>mm_chr19_15319891_15320959
          Length = 1069

 Score = 1278 bits (661), Expect = 0.0
 Identities = 667/669 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagcaagaaatagctaccagcagttacatttggcaaaaattcaaagcactcaagcaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagcaagaaatagctaccagcagttacatttggcaaaaattcaaagcactcaagcaagg 260

                                                                       
Query: 61  atatggagggaacttttatagtttaaaaaaggtcagaggcaagctttagaaatgctcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatggagggaacttttatagtttaaaaaaggtcagaggcaagctttagaaatgctcaag 320

                                                                       
Query: 121 ttggagttggtaagtgtagggatgctagaggtagccaatagtagtgtaaagtttatgtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggagttggtaagtgtagggatgctagaggtagccaatagtagtgtaaagtttatgtaa 380

                                                                       
Query: 181 ttgatttcaggaacttatgtgcatttctctgcttgattctgagtttcaatcagggtgaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatttcaggaacttatgtgcatttctctgcttgattctgagtttcaatcagggtgaaa 440

                                                                       
Query: 241 aacagagtagatgacaattatggatcacctgggccatttcaaccaaggtatagtgtagct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacagagtagatgacaattatggatcacctgggccatttcaaccaaggtatagtgtagct 500

                                                                       
Query: 301 tgcttgtggaatgttgcaggggttgcatatttcattttaactcacattctggatactttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgcttgtggaatgttgcaggggttgcatatttcattttaactcacattctggatactttc 560

                                                                       
Query: 361 tgttggtatagtcaaaattcaatccctcttccccattagagtgctgtaccatgtttgaga 420
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgttggtatagtcaaccttcaatccctcttccccattagagtgctgtaccatgtttgaga 620

                                                                       
Query: 421 agtgataccattcagaaagagctaaagagctagatcatctttaagccttgtgctgttgta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgataccattcagaaagagctaaagagctagatcatctttaagccttgtgctgttgta 680

                                                                       
Query: 481 tctcagtaactgtgtcatgaagtccttttaaactcctttgctgtatcattatagcaaata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctcagtaactgtgtcatgaagtccttttaaactcctttgctgtatcattatagcaaata 740

                                                                       
Query: 541 tctgatgagcaaacaacttcatggaatcaatcatggtcaaagaaaccagcactagaacac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctgatgagcaaacaacttcatggaatcaatcatggtcaaagaaaccagcactagaacac 800

                                                                       
Query: 601 tgatggaaataaagaacaatgcagagtcttggtaaagtcctaggatcaaggaacctcatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgatggaaataaagaacaatgcagagtcttggtaaagtcctaggatcaaggaacctcatt 860

                    
Query: 661 tactcaact 669
           |||||||||
Sbjct: 861 tactcaact 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)