BAC Information

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BAC

Clone NameMSMg01-519E21
Chromosome19 (Build37)
Map Location 27,474,093 - 27,598,682
singlet/doubletdoublet
Overlap geneD19Bwg1357e, LOC667868
Upstream gene1700048O14Rik, LOC100041846, LOC100041857, Smarca2, Gm815, LOC100042576, Vldlr, LOC100042588, Kcnv2
Downstream geneLOC100042612, Rfx3, LOC666997, LOC433235, Glis3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-519E21.T7 (MSMg01no519_e21.b1)MSMg01-519E21.TJ (MSMg01no519_e21.g1)
ACCAG590610AG590611
length752759
length of high quality
(start - end)		653 (39 - 691)559 (70 - 628)
definitionCHROMAT_FILE: MSMg01no519_e21.b1 PHD_FILE: MSMg01no519_e21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:59 2005CHROMAT_FILE: MSMg01no519_e21.g1 PHD_FILE: MSMg01no519_e21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:51:59 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(27,598,194 - 27,598,682)(27,474,093 - 27,474,650)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAA
TAAACTCCAAAAGACAGTGCCACGAATTCCAAGCAAAGGACATACTGAAG
GAAAAACAACAAAAAGCTATCTGTGTTGCGTCAAATGCCTTACCGAAGAC
TGCAAGCTTCTATCACCAGAGAGCTGTGGGGTTTGATTCACAAATATCTT
TCATATTTAATACTCTGCCTCATTTTTAGCCTTGCTTTGAGGGAAATTCC
TATTTTATCCATTTATGTACAAACTGAAATAAAATTAAGGACTGGGATTG
GTCTTAGGGGGCCAGACACATGTACCTTTCAACCAGAAGGCAACACAAGT
CAACTTTTGGGTCCACTGTCCTTTGTTCCCTAGGGATGATATTCCTGGAC
AGTCAGCAGCACCGACTTGGCCCCTTTTCTGCTGACAGCTCTACATGAAA
CACTACTCCAAGAGCCAACTTCTGATAAAGGTCTCTTTTTCTCTTCCCCT
CCTTTGCCTTCAGAGTAAACCAGAGTTTCCTGATTTCCTGATATTTTGAG
GCCAGATAATGTAGAGAAAGGGTTGTTCTGTACACTGAGGGATAATTAGC
AATCTCCCTACTAGATTGTTAGTAACACTGTAACTGCAGAGCACGGTGAC
CGAAATGCCCCCATGACACTGCCAAGTGTCCCCGCTGGAACTCAGTCCTT
ATACTTTAGCACCCACTCGTGGGTGGGAGCCACTATTCACAACCAAGACA
GA

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTAAGAAGTCTTAGGGAAATGGAGGGAGAG
AGGGAGGCATCTAGAGGATTTCTTGGAGTCATGAGCTGGCCTTCACCTGT
GCGCGTTGCCATCACCCTTCTGCAGAAGCTCGATGAGCTCGGGCACCGTG
TGGGCGGGGTCTCTGGGGCTCATCAAGTACAAGAGGACTTTCCTTCCGTA
TTTGTCATTAACTATGCTGGGCAAGGAACTGATGATTTCCTAGATAATGG
AAACAAAAATGTCCACTGTTTATTATATTCCCAGAGTTCCGCTGAGATTT
GATGGGGATGAAGAACACACCCTGGGTATTTTCCTCACTCCACTCACGTC
ACTTGTGACGTCAATTCTGACATGTCTTATCAAAGCACAAAGAATTACTT
TCAGAACTGTTCATTCTCTGCTGTGGTGGCCATTATTGAACAATCTGTTT
GAACTAACTGATCAAACCCAAGGACTTTTTAAAGTTAGAAGAGCTACCTC
CACTCATTGTGAGTATGGGTCGGGCCGCTATTACTAAGGACAGCACCTGC
TGCGATCTGAGTGGACAGTCAATCTGCAGGAGACTTAATGTAGCATGAGC
CTTGATGAAGCACGGACCTCAGAAACCTCCTGCTGAGCCAGNAGACAGGA
AGCTGCTCTGCTTATCCAAAGAGTATGAAAGCTNAGCTAGGGTGCTTATT
CACAGCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no519_e21.b1 MSMg01no519_e21.b1 CHROMAT_FILE:
MSMg01no519_e21.b1 PHD_FILE: MSMg01no519_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:59 2005
         (653 letters)



>mm_chr19_27597830_27598882
          Length = 1053

 Score =  907 bits (469), Expect = 0.0
 Identities = 484/489 (98%)
 Strand = Plus / Minus

                                                                       
Query: 165 atatttaatactctgcctcatttttagccttgctttgagggaaattcctattttatccat 224
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 atatttaatactctgccttatttttagccttgctttgagggaaattcctattttatccat 794

                                                                       
Query: 225 ttatgtacaaactgaaataaaattaaggactgggattggtcttagggggccagacacatg 284
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 793 ttatgtacaaactgaaataaaattaaggactgggattagtcttagggggccagacacatg 734

                                                                       
Query: 285 tacctttcaaccagaaggcaacacaagtcaacttttgggtccactgtcctttgttcccta 344
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 733 tacctttcaaccagaaggcaacacaagtcaacttttgggtccactgtcctctgttcacta 674

                                                                       
Query: 345 gggatgatattcctggacagtcagcagcaccgacttggccccttttctgctgacagctct 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gggatgatattcctggacagtcagcagcaccgacttggccccttttctgctgacagctct 614

                                                                       
Query: 405 acatgaaacactactccaagagccaacttctgataaaggtctctttttctcttcccctcc 464
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 acatgaaacactactccaagagccaacttctgataaaggtctctttttctcttcccctcc 554

                                                                       
Query: 465 tttgccttcagagtaaaccagagtttcctgatttcctgatattttgaggccagataatgt 524
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 553 tttgccttcagagtaaaccagagtttcctgatttcctgatattttgaggccggataatgt 494

                                                                       
Query: 525 agagaaagggttgttctgtacactgagggataattagcaatctccctactagattgttag 584
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agagaaagggttgttctgtacactgagggataattagcaatctccctactagattgttag 434

                                                                       
Query: 585 taacactgtaactgcagagcacggtgaccgaaatgcccccatgacactgccaagtgtccc 644
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 taacactgtaactgcagagcacggtgaccgaaatgcccccatgacactgccaagtgtccc 374

                    
Query: 645 cgctggaac 653
           |||||||||
Sbjct: 373 cgctggaac 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no519_e21.g1 MSMg01no519_e21.g1 CHROMAT_FILE:
MSMg01no519_e21.g1 PHD_FILE: MSMg01no519_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:59 2005
         (559 letters)



>mm_chr19_27473892_27474850
          Length = 959

 Score = 1048 bits (542), Expect = 0.0
 Identities = 554/558 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctaagaagtcttagggaaatggagggagagagggaggcatctagaggatttcttggagtc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctaagaagtcttagggaaatggagggagagagggaggcatctagaggatttcttggagtc 261

                                                                       
Query: 62  atgagctggccttcacctgtgcgcgttgccatcacccttctgcagaagctcgatgagctc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atgagctggccttcacctgtgcgcgttgccatcacccttctgcagaagctcgatgagctc 321

                                                                       
Query: 122 gggcaccgtgtgggcggggtctctggggctcatcaagtacaagaggactttccttccgta 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gggcaccgtgtgggcggggtctctggggctcatcaagtacaagaggactttccttccgta 381

                                                                       
Query: 182 tttgtcattaactatgctgggcaaggaactgatgatttcctagataatggaaacaaaaat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 382 tttgtcattaactatgctgggcaaggaactgatgatttcctagataatggaaacaaaaac 441

                                                                       
Query: 242 gtccactgtttattatattcccagagttccgctgagatttgatggggatgaagaacacac 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 gtccactgtttattatattcccagagttccgctgagatttgatggggatgaagaacacac 501

                                                                       
Query: 302 cctgggtattttcctcactccactcacgtcacttgtgacgtcaattctgacatgtcttat 361
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 502 cctgggtattttcctcactccactcacatcacttgtgacgtcaattctgacatgtcttat 561

                                                                       
Query: 362 caaagcacaaagaattactttcagaactgttcattctctgctgtggtggccattattgaa 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 caaagcacaaagaattactttcagaactgttcattctctgctgtggtggccattattgaa 621

                                                                       
Query: 422 caatctgtttgaactaactgatcaaacccaaggactttttaaagttagaagagctacctc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 caatctgtttgaactaactgatcaaacccaaggactttttaaagttagaagagctacctc 681

                                                                       
Query: 482 cactcattgtgagtatgggtcgggccgctattactaaggacagcacctgctgcgatctga 541
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 682 cactcattgtgagtatgggtcaggccgctattactaaggacagcacctactgcgatctga 741

                             
Query: 542 gtggacagtcaatctgca 559
           ||||||||||||||||||
Sbjct: 742 gtggacagtcaatctgca 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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