XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAAAGG
TAGCAGAGGAACTGAGAGCACACTAATCTCAAAGCAGCTTGACCATATGG
ATGTGCACAGACACATCTTACTGTGAACTTTCGGAGCTAATCCGTTTGAT
TGGGTTTGCTTGTGTCTGGTCCTGAGACTGCATGTAGATGAGGTTAGGTA
ATGAGCACAACCAACCTTCTCGCTTTCCCATGGCGTCGACTTAATTTGCC
TCTGCATAAAACATCCGTCACAGAACCCTAAGCTAAATTCTTTTATCCTT
ATCACAAAAATCCAGAACATAGAAGTCAGAAAAAGTCAACTGACTTTTTG
GAGGTCTCCTGAATCAGAACTGCCAATCATGAAACTAGAAGCCAGTCTCT
CTTGCCTCAGATTGCATGGCATTTCCAAATGGCATTGCTTGTCTTCCATC
TCTGCCAATCACCTGCTTTGCTATTCTTGTTTTATCCTTGTCCTGATGAC
CTGAGTTCTGTCCTTCTTTGGGGGTCTCATCTTTCACTTTATCAACTATC
TAGGAAAAGGATTTTTTTAATTAACATAGAGGAATCGCTGGGGCTTATAA
TTCATAGCAATTTGATCGGGTCTTTGCTTTCCTTCTTTGTTTTGTTACAC
TGTGTAAGTAAACATTAGAGCATGTTACCTAAGGCATGTTAATGTCTTTC
ACAGGATACTTAGCAGCTCAATTGAGATAATCACAGACATTCAAACATTT
TTCATAGTGCTCN

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGA
AAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGG
TTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCT
CCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCT
CCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTA
CACAATGGGAGTACTACTTCAGCCTATTAAAAAGGAAGGAATTTATTTGA
AATTTCCCCTACCCAAAAGGGGATGGGCCCTGGGGAGGGGGCTCTCTCCC
CTCGGGGGGGGGGGGAGAAACACTTTTTCCTCAAAAAAAACCCCCCCCCC
CCCTTATTTTTTTTCCTCCCGAATAGAGGGGAGAGTTTCTAGNTGCCGNN
NNTTCTNNNNNTCACCCNCGNATTTCCCCTTCCCCTACACATAAA

Query= MSMg01no519_o16.b1 MSMg01no519_o16.b1 CHROMAT_FILE:
MSMg01no519_o16.b1 PHD_FILE: MSMg01no519_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:47 2005
         (693 letters)



>mm_chr19_31402685_31403778
          Length = 1094

 Score = 1232 bits (637), Expect = 0.0
 Identities = 677/691 (97%), Gaps = 3/691 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaaaggtagcagaggaactgagagcacactaatctcaaagcagcttgaccata 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 gaattcttaaagggagcagaggaactgagagcacactaatctcaaagcagcttgaccata 835

                                                                       
Query: 65  tggatgtgcacagacacatcttactgtgaactttcggagctaatccgtttgattgggttt 124
           ||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 834 tggatgtgcacggacacatcttactgtgaactttcggaactaatccgtttggttgggttt 775

                                                                       
Query: 125 gcttgtgtctggtcctgagactgcatgtagatgaggttaggtaatgagcacaaccaacct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gcttgtgtctggtcctgagactgcatgtagatgaggttaggtaatgagcacaaccaacct 715

                                                                       
Query: 185 tctcgctttcccatggcgtcgacttaatttgcctctgcataaaacatccgtcacagaacc 244
           ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 714 tctcgctttcccatggcgtcgacttaacttgactctgcataaaacatccgtcacagaacc 655

                                                                       
Query: 245 ctaagctaaattcttttatccttatcacaaaaatccagaacatagaagtcagaaaaagtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ctaagctaaattcttttatccttatcacaaaaatccagaacatagaagtcagaaaaagtc 595

                                                                       
Query: 305 aactgactttttggaggtctcctgaatcagaactgccaatcatgaaactagaagccagtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 594 aactgactttttggaggtctcctgaatcagaactgccaatcatgaaattagaagccagtc 535

                                                                       
Query: 365 tctcttgcctcagattgcatggcatttccaaatggcattgcttgtcttccatctctgcca 424
           |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 534 tctcttgcctcaaattgcatggcatttccaaatgacattgcttgtcttccatctctgcca 475

                                                                       
Query: 425 atcacctgctttgctattcttgttttatccttgtcctgatgacctgagttctgtccttct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 atcacctgctttgctattcttgttttatccttgtcctgatgacctgagttctgtccttct 415

                                                                       
Query: 485 ttgggggtctcatctttcactttatcaactatctaggaaaaggatttttttaattaacat 544
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 414 ttgggggtctcatctttcactttatcaactatctaggaaaagga-ttttttaattaacat 356

                                                                       
Query: 545 agaggaatcgctggggcttataattcatagcaatttgatcgggtctttgctttccttctt 604
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 355 agaggaatcgctggggcttataattcatagcaatttgattgggtctttgctttccttctt 296

                                                                       
Query: 605 tgttttgttacactgtgtaagtaaacatta--gagcatgttacctaaggcatgttaatgt 662
           |||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 295 tgttttgtgacactgtgtaagtaaacattagtgagcatgttacctaaggcatgttaatgt 236

                                          
Query: 663 ctttcacaggatacttagcagctcaattgag 693
           |||||||||||||||||||||||||||||||
Sbjct: 235 ctttcacaggatacttagcagctcaattgag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1094
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1084
Effective search space:   740372
Effective search space used:   740372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)