BAC Information

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BAC

Clone NameMSMg01-520F16
Chromosome19 (Build37)
Map Location 12,942,202 - 12,942,847
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444
Downstream geneOlfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520F16.T7 (MSMg01no520_f16.b1)MSMg01-520F16.TJ (MSMg01no520_f16.g1)
ACCAG591405AG591406
length749746
length of high quality
(start - end)		674 (51 - 724)558 (83 - 640)
definitionCHROMAT_FILE: MSMg01no520_f16.b1 PHD_FILE: MSMg01no520_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:22 2005CHROMAT_FILE: MSMg01no520_f16.g1 PHD_FILE: MSMg01no520_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTCCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTCAAATCCTTTCAGGAACAAAAAGAGGTTGTCGGATGT
CCTGGAACTAAAGTTACAGGTGATTGTCAGCTGTCTAATATGGGACTGGA
AACCAAACCTAGGTCTTCTGCAGGAACCCCAAGTGCTCTTAACTGCTAAC
CTATCTCTCTTAACTCTGTAAAGCTCATTTCTATGTAACGCAACCATAAC
TGTTTTGGAAAAAAAAATTAATGTAGCCTGGGAAAAGCCACATTTTTCTA
ACTCTGCTGGGATATAAAACCATAAAGAAATATACTTAAGCTCAACCTAC
TATGTAATATAACAGTTTTAGCATTTATATTCTGAACTTTAATTTAGTAA
ATAATGTATTATTTTCCCGAAGTATGTTCTACATTCTTCTTGAGGAGTTT
CAAGTGTGAAGTCTCCCTTGAACCTTCTGGGCAGTGATTTGTGTGTGATG
GACTTCCTCATAGTGTTCCTTATTCCTTAGATCTTCCCCAGAGGAAGTGA
GTAGGAGTTGTCAAATGAGCATCCAGCCTATGTTTGACAAACTTCCCACT
TGCCTTTCCCTACAGTAATACAAATTCTGTCTACTGATGGCTTGCTAGAA
ACATGATGCCTTTTTCTGTATAGTAGCTTCTATAAACAAATACCTATATA
ATGCCATCTTGAAGCATATCTGCCATAGGTATTTGAGATTTAGAATAGA

NTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATCAACAGACCACAGA
GATACTTGCATATCCATGTTATTTTTTTATTGGTTATTTTACTTATTTAC
ATTTCAAATGTTATCCACCTTCCTGGTTTCCCCTCCACAAACCTTCTATG
CAATCCTCCTCCCCCCTGCTTCTACGAGGGTGCTCCCCCATCCATCTACC
TGCTCCTGCCTGACTGCCCTAGCGTTCCCCTACGCTAGGGCATTGAGCCT
TTACAAGACCAAGGGCCTCCCCTCCCACTGATACCAGATAAGGCTATCCT
CTGCTAATGACACAGCTGGAGCCATGGGCACCCCCATGTGTACTCTTTGG
TTGGTGGTTTATTCCCTGTGAGCTCTGGGGAGGGTGGAAGGAGGTTGGTT
GATATTGTTGTTCTTTCTGTGGGGTTGCAAACTCCTTCAGCTACTTCAAT
CTCCTGTCAGTAAGTACTTCTTAGCATCAGCAATAGTGTCTGGGTTTGGT
GTCTGCAGATGTGATGAATCTCTAGATAGGGTAGTCTCTGGGTGGCCTTT
CCTTCAGTCTCTGCTCCACTCTTTGTCCCTGCATTTCCTTTATACAGGAG
CAATTCTGGGTTAATATTTTTGAGATGAGTAAGTAGCCCCATCCCTCAAC
CAGGGGCCATGCCTAACCTCTGTTTATTCTCTCTGCAAGTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_f16.b1 MSMg01no520_f16.b1 CHROMAT_FILE:
MSMg01no520_f16.b1 PHD_FILE: MSMg01no520_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:22 2005
         (674 letters)



>mm_chr19_12942060_12943134
          Length = 1075

 Score = 1075 bits (556), Expect = 0.0
 Identities = 628/662 (94%), Gaps = 17/662 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcattcaaatcctttcaggaacaaaaagaggttgtcggatgtcctggaactaaagt 64
           |||||||||||||| ||||| || |||||||||||||||| |||||||||||||| ||||
Sbjct: 788 gaattcattcaaatgctttcggggacaaaaagaggttgtcagatgtcctggaactgaagt 729

                                                                       
Query: 65  tacaggtgattgtcagctgtctaatatgggactggaaaccaaacctaggtcttctgcagg 124
           ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 728 tacaggtgattgtcagctgtctattatgggactgaaaaccaaacctaggtcttctgcagg 669

                                                                       
Query: 125 aaccccaagtgctcttaactgctaacctatctctcttaactctgtaaagctcatttctat 184
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 668 aaccccaagtgctcttaactgctagcctatctctcttaactctgtaaagctcatttctat 609

                                                                       
Query: 185 gtaacgcaaccataactgttttggaaaaaaaa-attaatgtagcctgggaaaagccacat 243
           ||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 608 gtaacgcaaacataagtgttttggaaaaaaaacattaatgtagcctgggaaaagccacat 549

                                                                       
Query: 244 ttttctaactctgctgggatataaaaccataaagaaatatacttaagctcaacctactat 303
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 548 ttttctaactctgctgggatataaaaccataaagaaatatacttaaactcaacctactat 489

                                                                       
Query: 304 gtaatataacagttttagcatttatattctgaactttaatttagtaaataatgtattatt 363
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 488 gtaatataacagttttagcatttatattctgaactttaatatagtaaataatgtattatt 429

                                                                       
Query: 364 ttcccgaagtatgttctacattcttcttgaggagtttcaagtgtgaagtctcccttgaac 423
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 428 ttcccgaagtatgttctacattcttcttgaggagtttcaagtgagaagtctcccttgaac 369

                                                                       
Query: 424 cttctgggcagtgatttgtgtgtgatggacttcctcatagtgttccttattccttagatc 483
           |||||||||                |||||||||||||||||||||||||||||||||||
Sbjct: 368 cttctgggc----------------tggacttcctcatagtgttccttattccttagatc 325

                                                                       
Query: 484 ttccccagaggaagtgagtaggagttgtcaaatgagcatccagcctatgtttgacaaact 543
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttccccagaggaaatgagtaggtgttgtcaaatgagcatccagcctatgtttgacaaact 265

                                                                       
Query: 544 tcccacttgcctttccctacagtaatacaaattctgtctactgatggcttgctagaaaca 603
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcctacttgcctttccctacagtaatacaaattctgtctactgatggcttgctagaaaca 205

                                                                       
Query: 604 tgatgcctttttctgtatagtagcttctataaacaaatacctatataatgccatcttgaa 663
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 tgatgcttttttctgtatagtagcttctataaacaaatacctatataatgccatcttgaa 145

             
Query: 664 gc 665
           ||
Sbjct: 144 gc 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1075
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1065
Effective search space:   707160
Effective search space used:   707160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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