BAC Information

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BAC

Clone NameMSMg01-520G03
Chromosome19 (Build37)
Map Location 51,392,494 - 51,393,193
singlet/doubletsinglet
Overlap genenone
Upstream geneSorcs1
Downstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936, Ins1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-520G03.T7 (MSMg01no520_g03.b1)MSMg01-520G03.TJ (MSMg01no520_g03.g1)
ACCAG591427AG591428
length763765
length of high quality
(start - end)
718 (46 - 763)695 (71 - 765)
definitionCHROMAT_FILE: MSMg01no520_g03.b1 PHD_FILE: MSMg01no520_g03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:25 2005CHROMAT_FILE: MSMg01no520_g03.g1 PHD_FILE: MSMg01no520_g03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:53:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTTCGTCTCTGTACCCCATCTTTTAATAGGGCTATTTGATAC
TCAGGAGTCTAACTTCTTGAGTTCTTTGTATATATTGAGGATTAGCCCTC
CATCAGATGTAGGGGTGGTAAAGATCTTTGACCAATCTGTGGTTTTCAAT
TTTATGAAGTCCCATTTGTCAATACTTTTTAAAAAAAAACTTTATTGGAT
ACTTTCTTCATTTACATTTCAAATGTTATCCTCTTTCCTGGTTTCCCCTC
TGGAAACTCCCTATCCCCTATCCCCTATCCCTTCCACCAGCCCGCCAAAC
CCACTCTTTATCTTAGAGCATTGGTGTTCTGTTCAGGAAAATTTCCCATG
TGCCAATATGTTTGAAGTTCTTTCCCACTTTCTCTTCTATTAGATTCATC
TTATCTGGTTTTATGTGGAGGTCCTTGATCACTTGGACTTGAGCTTTGTA
CAATGAGATAAGAATGAGTCTATTTGCATTCTTCTATATGCTGACCTCCA
GTTGAACCAGCACCATTTGTTGAAAATGCTGTCCTTTTCCCACTGAATGT
TTTTAGCCCCTTTATCAAAGATCAAGTGGCCATAGGTGTGTGGGTTCATT
TCTGAGTCTTCAGTTCTATTCCATTGATCGACCTCTCTGTCTCTGTACCA
ATACCATGTAGTTTTTAATCACTACTGTTTTGTAGTATAGCTTGAGGTCA
GAAATGGTGATTC
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTAGGCCATCGTTCAACATACAGGGCATG
GCATAGATGCACAATAAATGATGAACTGATACTGTTATAAGACAATATGC
ATCCGAAGATAACCAGAAACACCAATCTCCATTCTATTGAATTAATGTGT
AATTTTGCATTTAATGCCTATCTTGAATGTTGCAATGAAATTGCAAAGGT
TCAGAATTATAACTGCTTTATAGACCACTTATTACCCAGTATTAGACACA
ATTCTTGTCACATAGTGTGAAGTGATACATATAAAAAGAGGATGGGCTGG
GGAAAAATAGTTTCTGTGGTAATTATGGGACATACAGCTGGTAAATGGTA
GATTTTTATGGACTAACAAATTGTTCAAAGTGTTTCCATAGTTGTACAAT
GAGGCCATTTGCATTAAATATGCAAAGTATTAGTAATTTAACTTGAAAGT
CTAACTCTCCAGTGTTTATGCTTCTGTTTTATTTCTACTTCACTTGTCAT
ACATCCATTTTCTTGTCCTGCCCACACATTTAATAGACAACCTTTATTGC
CTATCAATTTTTCTGATGTTCTCAATATTAATGTATAGCGTATCTCTTGA
CAATCAGTATAATTTCTGGAAATTGATAATCAGAGGTTGAGGAGATTTTT
CCAAGGGTAAATTTCACAGAGAAATCAGAGGTGGAAACAAGGTAAAGGGA
GAGAGGTCAAACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no520_g03.g1 MSMg01no520_g03.g1 CHROMAT_FILE:
MSMg01no520_g03.g1 PHD_FILE: MSMg01no520_g03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:25 2005
         (695 letters)



>mm_chr19_51392294_51393393
          Length = 1100

 Score = 1299 bits (672), Expect = 0.0
 Identities = 691/700 (98%), Gaps = 5/700 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaggccatcgttcaacatacagggcatggcatagatgcacaataaatgatgaactgat 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 agtaggccatcgtccaacatacagggcatggcatagatgcacaataaatgatgaactgat 841

                                                                       
Query: 61  actgttataagacaatatgcatccgaagataaccagaaacaccaatctccattctattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 actgttataagacaatatgcatccgaagataaccagaaacaccaatctccattctattga 781

                                                                       
Query: 121 attaatgtgtaattttgcatttaatgcctatcttgaatgttgcaatgaaattgcaaaggt 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 attaatgtgtacttttgcatttaatgcctatcttgaatgttgcaatgaaattgcaaaggt 721

                                                                       
Query: 181 tcagaattataactgctttatagaccacttattacccagtattagacacaattcttgtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tcagaattataactgctttatagaccacttattacccagtattagacacaattcttgtca 661

                                                                       
Query: 241 catagtgtgaagtgatacatataaaaagaggatgggctggggaaaaatagtttctgtggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 catagtgtgaagtgatacatataaaaagaggatgggctggggaaaaatagtttctgtggt 601

                                                                       
Query: 301 aattatgggacatacagctggtaaatggtagatttttatggactaacaaattgttcaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aattatgggacatacagctggtaaatggtagatttttatggactaacaaattgttcaaag 541

                                                                       
Query: 361 tgtttccatagttgtacaatgaggccatttgcattaaatatgcaaagtattagtaattta 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tgtttccatagttgttcaatgaggccatttgcattaaatatgcaaagtattagtaattta 481

                                                                       
Query: 421 acttgaaagtctaactctccagtgtttatgcttctgttttatttctacttcacttgtcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 acttgaaagtctaactctccagtgtttatgcttctgttttatttctacttcacttgtcat 421

                                                                       
Query: 481 acatccattttcttgtcctgcccacacatttaatagacaacctttattgcctatcaattt 540
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 acatccatgttcttgtcctgcccacacatttaatagacaacctttattgcctatcaattt 361

                                                                       
Query: 541 ttctgatgttctcaatattaatgtatagcgtatctcttgacaatcagtataatttctgga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttctgatgttctcaatattaatgtatagcgtatctcttgacaatcagtataatttctgga 301

                                                                       
Query: 601 aattgataatcag-----aggttgaggagatttttccaagggtaaatttcacagagaaat 655
           |||||||||||||     ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aattgataatcagacttcaggttgaggagatttttccaagggtaaatttcacagagaaat 241

                                                   
Query: 656 cagaggtggaaacaaggtaaagggagagaggtcaaacttt 695
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cagaggtggaaacaaggtaaagggagagaggtcaaacttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1100
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1090
Effective search space:   746650
Effective search space used:   746650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)