Query= MSMg01no520_j11.b1 MSMg01no520_j11.b1 CHROMAT_FILE:
MSMg01no520_j11.b1 PHD_FILE: MSMg01no520_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:41 2005
(601 letters)
>mm_chr19_10468078_10469072
Length = 995
Score = 1098 bits (568), Expect = 0.0
Identities = 587/598 (98%), Gaps = 10/598 (1%)
Strand = Plus / Plus
Query: 6 gaattccccaagggttggagcagagttggcagacagaatgagacctgtggaagggactgg 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccccaagggttggagcagagttggcagacagaatgagacctgtggaagggactgg 265
Query: 66 agagtgcccagcatctatgcctgcattcccaacccttgataggaaggtgggctggctcgg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agagtgcccagcatctatgcctgcattcccaacccttgataggaaggtgggctggctcgg 325
Query: 126 cggctgctcgggaaggctgggcagcttctacctggaaggagccctagggaaaggtatgtc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cggctgctcgggaaggctgggcagcttctacctggaaggagccctagggaaaggtatgtc 385
Query: 186 acctggggtggttgggcctgcaactgagttatatggtgggctgggatgtttggggaattg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acctggggtggttgggcctgcaactgagttatatggtgggctgggatgtttggggaattg 445
Query: 246 gtatatccacgtgagagaacatgtggggctccagcgaggggggaggggaagctggggtgc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gtatatccacgtgagagaacatgtggggctccagcgaggggggaggggaagctggggtgc 505
Query: 306 tagcagaagcttggtggctgtgtgtgtacctacatgcgtgcgtgcgtgtgcgggaggcag 365
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 506 tagcagaagcttggtggctgtgtgtgtacctac----gtgcgtgcgtgtgcgggaggcag 561
Query: 366 ctggctggccgtaatagctgcgctcctgtgccgagtgccctgcccgctgtaaacagcagc 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctggctggccgtaatagctgcgctcctgtgccgagtgccctgcccgctgtaaacagcagc 621
Query: 426 taatgagtgtattcatagcaaggtgcattgaggtgcatagggagccgtaatggaaagctc 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 taatgagtgtattcatagcaaggtgcattgaggtgcatagggagccgtaatggaaagctc 681
Query: 486 ccaggagggccccccccccc--ccgccctgtactcagcctgacagggtggggactctcta 543
||||||||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct: 682 ccaggagggcccctccccccatcc----tgtactcagcctgacagggtggggactctcta 737
Query: 544 gggatcctgcctaccccctgccacaccctcaacctgccaacttggcttccatcttcag 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gggatcctgcctaccccctgccacaccctcaacctgccaacttggcttccatcttcag 795
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 995
Length adjustment: 10
Effective length of query: 591
Effective length of database: 985
Effective search space: 582135
Effective search space used: 582135
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_j11.g1 MSMg01no520_j11.g1 CHROMAT_FILE:
MSMg01no520_j11.g1 PHD_FILE: MSMg01no520_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:41 2005
(657 letters)
>mm_chr19_10646653_10647709
Length = 1057
Score = 1137 bits (588), Expect = 0.0
Identities = 611/624 (97%), Gaps = 9/624 (1%)
Strand = Plus / Minus
Query: 1 attaaaattcctgactttaaattaggggtgtggctcaagggtagagctcttccctggcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 attaaaattcctgactttaaattaggggtgtggctcaagggtagagctcttccctggcct 556
Query: 61 tggttctcagcaccaccatcaaaacagcagacccttggtctctagtcactttttcacttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tggttctcagcaccaccatcaaaacagcagacccttggtctctagtcactttttcacttt 496
Query: 121 ctctggaccaccatgtgggtgtccctggcgtgccacaggaaagcaacagagcagtgtgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 ctctggaccaccatgtgggtgtccctggcgtgccacaggaaagcaacagagcagtgtgca 436
Query: 181 agggtcacggggcttcctctgtcaggcctgggctctgcttcctggagctcagtatttaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agggtcacggggcttcctctgtcaggcctgggctctgcttcctggagctcagtatttaag 376
Query: 241 ctgttgatgtcactaagcctgatgctgaatgcactaaggtgctgatcctgagctgctgtg 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 375 ctgttgatgtcactaagcctgatgctgaatgcactaaggtgctgagcctgagctgctgtg 316
Query: 301 ggctgaaaggtgagcagagacacttcagagatcattcttgacagatgaatcccctagttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 315 ggctgaaaggtgagcagagacacttcagagatcattcttgacagatgaatcccctcgttc 256
Query: 361 agccttagaggagacccctttgaagcaaatctaaaaaggagcaggaggtggctgagagcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agccttagaggagacccctttgaagcaaatctaaaaaggagcaggaggtggctgagagcc 196
Query: 421 agcaagatggccaagcaggttaaggaatgtcctgccaagcatgacgctctgggtttgatc 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 195 agcaagatggccaagcaggttaaggaatgtcctgccaagcttgacgctctgggtttgatc 136
Query: 481 cctgagacccacatgatggaaggagggacctgactcttggaagttgtcttctatctctgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 cctgagacccacatgatggaaggagggacctgactcttggaagttgtcttctatctctgc 76
Query: 541 atgtatgctattacacacgtattattattattattattattatacacatacatatgtgca 600
||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 75 atgtatgctattacacacg---------tattattattattatacacatacatatgtaca 25
Query: 601 tacacacatgcacacatacacaca 624
||||||||||||||||||||||||
Sbjct: 24 tacacacatgcacacatacacaca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
