BAC Information

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BAC

Clone NameMSMg01-521A02
Chromosome19 (Build37)
Map Location 10,935,973 - 11,059,035
singlet/doubletdoublet
Overlap geneTmem132a, Tmem109, Prpf19, Zp1, Gpr44, Ccdc86, Ms4a10, E530011F12Rik
Upstream geneIncenp, LOC100040215, Fth1, Best1, Rab3il1, Fads3, Fads2, LOC100040227, Fads1, Fen1, 1810006K21Rik, Gm98, Dagla, Syt7, Gm705, 4930579J09Rik, 0610038F07Rik, 5730453I16Rik, 2810441K11Rik, Tmem138, Cybasc3, Dak, Ddb1, Vwce, Pga5, 2210404E10Rik, Vps37c, Cd5, Cd6, Slc15a3
Downstream gene5033428B15Rik, AW112010, Ms4a8a, Gm336, LOC624395, 1700025F22Rik, Ms4a13, Ms4a12, Ms4a1, Ms4a5, Gm1276, Ms4a7, Ms4a4a, LOC435588, Ms4a4c, LOC433221, Ms4a4b, Ms4a6c, EG666926, Ms4a6b, Ms4a4d, LOC100040454, Ms4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521A02.T7 (MSMg01no521_a02.b1)MSMg01-521A02.TJ (MSMg01no521_a02.g1)
ACCAG591903AG591904
length740723
length of high quality
(start - end)		687 (54 - 740)557 (85 - 641)
definitionCHROMAT_FILE: MSMg01no521_a02.b1 PHD_FILE: MSMg01no521_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:12 2005CHROMAT_FILE: MSMg01no521_a02.g1 PHD_FILE: MSMg01no521_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,058,612 - 11,059,035)(10,935,973 - 10,936,529)
sequence
NNNAAAAAAANNNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTTTCCCCCTTTGACCTCACCCAATAAATGAGAAAAT
AAATGACCAGAACTCCAAAGAGGATTAAGAATGATGGATGGGGGACGGCA
ACGCTAGCAAAGATGGAAATATCTCTCTGGGGAGCCGACACTGAGGCTAG
ATCTTACAAGTTAAAGCCAGCCCAGCAAGAGCGGATGGGCAGAAGGATGG
GTGAGGGGTAGGATTAACTATCATGAAGACCAGCAAATGCAAAGGTCCTG
AGGTGGGAATGGGTGTGGCTTGTCAACGAAAGATACAGAATACTGTCATG
CCTGGAATGTAATGAATAAAAGAAAGGCTGACAAGGGATGAAAATGAAAT
GATAGGTGAGAGCCAACTCCTGTAGAGCTGAGAGTCCACCAAGTGTGGCT
TCCAAGCCCTTCTCCCATCTCAAACGGCCTAGATAGTGGTCTCTAAGAAG
GATAAAATATAGATTAGATAGATGAAATAGATAGATGAAAAACAGATAGA
TGGTAGATGAATAAAATTGATTAAGAGGATAAGAGGTAGATGATGATTAA
TAAATATGATTGATAAATGTCAGATAGGATGGATAAGTAAGACAGGATAA
ATATGTAGGTAAGACAAGTAGACGATAGAATATATAATATATAATAGGTG
GTGACTGATGGATAAGATAGATGATAAATTTTGAGGTTTT

TTTTTGTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTAAGCCCTGTGTCC
TATGCGCTCCTGCAGGCGGGTCTGTACTCACCCTTCGGCTGAGCCTGGGA
CCCTCCAGCCTCGGATTTGTTCCAGAGTGGTGTCAGTCAGCTCAATGCGC
AAGGGCAGGAGTGGGGCCCATACAGTCAGCTTTAGTGAGGCCCGAAGTCG
GCGCCACCAGAAGTCCACCCTCACCCCCTTGGCACCCCGGCTCTCCTGGC
CAGCCACGAACACAGCATCACAGGCCTCAGATACCTATGGCAAGGCAGAG
ATGTGTGGAGACACAAATGATAGGCACTGATACAGCATCACCTACTCCAG
CTATAAGCAGGGCTACAAAATTCAAATTCAGCTCTGATATCATAAATACA
TGTTGTGTGGTGGTCTGGACGGGGTGGGGGGAGGTACTCTTAGCTTAAAG
TATTTTGCTGTACTACCAAAATCCACTCCAGGGGCGTTACTGTAGGTTCC
CCAAGGGATGAGCTGGGCCATTTGCATGCAACATACATGCTAGCAGGGTC
CTCCTAGCAGGGTCTGGGTTGAACTCACAACTTTAGCTCCTCGGTGCCAA
TCTCAGACATTGGTGCTGGAGGCACCTAACAGCCAGCGGTAGCTGTAGCT
AAGTACTTGATGGCAGAGGGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_a02.b1 MSMg01no521_a02.b1 CHROMAT_FILE:
MSMg01no521_a02.b1 PHD_FILE: MSMg01no521_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:12 2005
         (687 letters)



>mm_chr19_11058612_11059698
          Length = 1087

 Score =  766 bits (396), Expect = 0.0
 Identities = 417/424 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctttccccctttgacctcacccaataaatgagaaaataaatgaccagaactcca 64
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gaattcccttccccctttgacctcacccaataaatgagaaaataaatgaccagaactcca 365

                                                                       
Query: 65  aagaggattaagaatgatggatgggggacggcaacgctagcaaagatggaaatatctctc 124
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 364 aagaggattaagaatgatggatgggggacggcaacgctagcaaagacggaaatatctctc 305

                                                                       
Query: 125 tggggagccgacactgaggctagatcttacaagttaaagccagcccagcaagagcggatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tggggagccgacactgaggctagatcttacaagttaaagccagcccagcaagagcggatg 245

                                                                       
Query: 185 ggcagaaggatgggtgaggggtaggattaactatcatgaagaccagcaaatgcaaaggtc 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 244 ggcagaaggatgggtgaggggtaggattaactatcatgaagaccagcaaatgcaaaggcc 185

                                                                       
Query: 245 ctgaggtgggaatgggtgtggcttgtcaacgaaagatacagaatactgtcatgcctggaa 304
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||
Sbjct: 184 ctgaggtgggaatgggtgtggcttgtcaacgaaagatacagaatactgtcgtgcttgtaa 125

                                                                       
Query: 305 tgtaatgaataaaagaaaggctgacaagggatgaaaatgaaatgataggtgagagccaac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 tgtaatgaataaaagaaaggctgacaagggatgaaaatgaaatgataggtgagagccaac 65

                                                                       
Query: 365 tcctgtagagctgagagtccaccaagtgtggcttccaagcccttctcccatctcaaacgg 424
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64  tcctgtagagctgagaatccaccaagtgtggcttccaagcccttctcccatctcaaacgg 5

               
Query: 425 ccta 428
           ||||
Sbjct: 4   ccta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no521_a02.g1 MSMg01no521_a02.g1 CHROMAT_FILE:
MSMg01no521_a02.g1 PHD_FILE: MSMg01no521_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:12 2005
         (557 letters)



>mm_chr19_10935773_10936729
          Length = 957

 Score = 1054 bits (545), Expect = 0.0
 Identities = 554/557 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaagccctgtgtcctatgcgctcctgcaggcgggtctgtactcacccttcggctgagc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 actaagccctgtgtcctatgcgctcctgcaggcgggtctgtactcacccttctgctgagc 260

                                                                       
Query: 61  ctgggaccctccagcctcggatttgttccagagtggtgtcagtcagctcaatgcgcaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggaccctccagcctcggatttgttccagagtggtgtcagtcagctcaatgcgcaagg 320

                                                                       
Query: 121 gcaggagtggggcccatacagtcagctttagtgaggcccgaagtcggcgccaccagaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaggagtggggcccatacagtcagctttagtgaggcccgaagtcggcgccaccagaagt 380

                                                                       
Query: 181 ccaccctcacccccttggcaccccggctctcctggccagccacgaacacagcatcacagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaccctcacccccttggcaccccggctctcctggccagccacgaacacagcatcacagg 440

                                                                       
Query: 241 cctcagatacctatggcaaggcagagatgtgtggagacacaaatgataggcactgataca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcagatacctatggcaaggcagagatgtgtggagacacaaatgataggcactgataca 500

                                                                       
Query: 301 gcatcacctactccagctataagcagggctacaaaattcaaattcagctctgatatcata 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcgtcacctactccagctataagcagggctacaaaattcaaattcagctctgatatcata 560

                                                                       
Query: 361 aatacatgttgtgtggtggtctggacggggtggggggaggtactcttagcttaaagtatt 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 aatacatgttgtgtggtggtctggacggggtggggggaggtgctcttagcttaaagtatt 620

                                                                       
Query: 421 ttgctgtactaccaaaatccactccaggggcgttactgtaggttccccaagggatgagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgctgtactaccaaaatccactccaggggcgttactgtaggttccccaagggatgagct 680

                                                                       
Query: 481 gggccatttgcatgcaacatacatgctagcagggtcctcctagcagggtctgggttgaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggccatttgcatgcaacatacatgctagcagggtcctcctagcagggtctgggttgaac 740

                            
Query: 541 tcacaactttagctcct 557
           |||||||||||||||||
Sbjct: 741 tcacaactttagctcct 757


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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