BAC Information

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BAC

Clone NameMSMg01-521H23
Chromosome19 (Build37)
Map Location 36,522,258 - 36,689,018
singlet/doubletdoublet
Overlap genePcgf5, Hectd2
Upstream geneLOC100042292, A830019P07Rik, Htr7, Rpp30, Ankrd1, LOC668195, LOC668201
Downstream geneLOC668215, Ppp1r3c, Tnks2, Fgfbp3, Btaf1, Cpeb3, March5, LOC668230, Ide, LOC100043010, Kif11, EG667490, LOC631069, Hhex, Exoc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-521H23.T7 (MSMg01no521_h23.b1)MSMg01-521H23.TJ (MSMg01no521_h23.g1)
ACCAG592279AG592280
length730759
length of high quality
(start - end)		638 (53 - 690)571 (84 - 654)
definitionCHROMAT_FILE: MSMg01no521_h23.b1 PHD_FILE: MSMg01no521_h23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:51 2005CHROMAT_FILE: MSMg01no521_h23.g1 PHD_FILE: MSMg01no521_h23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:54:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,522,258 - 36,522,891)(36,688,596 - 36,689,018)
sequence
NNNNNAAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTACACTCATTCAAGTCTGTGACTCAGGGTAGCTTCCAT
TCCTTTCCCCCTGGAGGAATGGTAGTCCTGAGTCTCCATCTGGTCCGTGG
CCTCAGGCAAGGGCACTGCATATCCGTGTCCCTCCCTCACGCTGTTTGCT
GCCTCAGGACAGTGTCAGGGAAGAGAGTTTCAGTCCAGTTCTACAATACC
TGAGTGTCCCTCTGCACCACCCAGCCTCTGTGGTCGTGCTGTGCTTTCCC
CTGTCACCTCCCCCTTTATCTTAGTCCTTTTTAGAAAAGATGAACATCGG
TGGCTTCTGCCTTTTCTAGACCTCGTCTCCATCATGATAAGTTACTTTTA
AACCTTTGTCCTTGTGAATTAAAACAAACACCTGGTCAAACAGCTGCTAT
ATATTTTTATAGTTCATAGCAGTGTTTTTGCTTGAAGATTGCTCTGCTGA
ATGTTGGAGTGGCTCTGTTGTTCACTAGCAGGGTAAATATTTAGCAGTTA
CTTCTTAAGTCTTAGTGCAAACACAAATCATCTAGGGACGGTGACAAAGT
GCAGTGATACTCAGCTGGCTTGGGATAGGCCTCAGACACACTTCTAAAGC
TTCACACCTGTGTGAACACCCATGTTTAACATTTTGGAAGATGTAGTCTG
TGACCAGGTTTCTTCTGTGGCTTCCACAAN

NNNNNNNCCCATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGTCATATGAACAAG
CAAGCCACATTCTCTTCTGTTCTGCTACAGATGGAGGTCAGAGCTTACCG
TATGGTCAGGTCTGTCTTCGCATAGCCATCGTACTGTGTACTCCTCTGCA
GTGCATGCATATCCAGTTCAGGACTGCCACAAACCAGGATTTCTACTTCT
TCTGGACGAAGCAGCTATCAATAATCACAAAAACCATAATTCAAAATGAT
AGTCTTGCCGGGCAGTGGCGGTGCCCTCCTTTAATCCCAGCACTCGGGAG
GCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTG
AGTTCCAGGACAGCCAGGGCTGCACAGAGAAACCCTGTCTTGAAAATCCA
AATTTAAAAAAATGATAGTCTTAAATGAAATTTGAAGTGTTTTTATTGCA
GAATCAAATCATAGAAATTATGACACTGTCTCAGTAAATAAAATTACTTT
TTTGTTGAAGAAAATGCTTTCCATTTATGTTTTTCTGCTACAATATGTAT
TGTTTCAAAAGGTTTGTATCTTACAACAGTAATCAGTAGTTTGCTAGAAA
ACCAAGTAAACAACTCAGCATGAAGCAAACTCATTCTTCTCCAATCAGCA
NGAAGCACTGATGTGTCCTGAGCTGTCCTGCCACCTCTGCTGTGCTCTGT
GCACTGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no521_h23.b1 MSMg01no521_h23.b1 CHROMAT_FILE:
MSMg01no521_h23.b1 PHD_FILE: MSMg01no521_h23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:51 2005
         (638 letters)



>mm_chr19_36522054_36523091
          Length = 1038

 Score = 1133 bits (586), Expect = 0.0
 Identities = 622/634 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctacactcattcaagtctgtgactcagggtagcttccattcctttccccctggag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctacactcattcaagtctgtgactcagggtagcttccattcctttccccctggag 264

                                                                       
Query: 65  gaatggtagtcctgagtctccatctggtccgtggcctcaggcaagggcactgcatatccg 124
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 265 gaatggtagtcctgagtctccttctggtccgtggcctcaggcaagggcactgcataaccg 324

                                                                       
Query: 125 tgtccctccctcacgctgtttgctgcctcaggacagtgtcagggaagagagtttcagtcc 184
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtccctccctcatgctgtttgctgcctcaggacagtgtcagggaagagagtttcagtcc 384

                                                                       
Query: 185 agttctacaatacctgagtgtccctctgcaccacccagcctctgtggtcgtgctgtgctt 244
           |||||| || |||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 385 agttctgcagtacctgagtgtccctctgcaccgcccagcctctgtggtcgtgttgtgctt 444

                                                                       
Query: 245 tcccctgtcacctccccctttatcttagtcctttttagaaaagatgaacatcggtggctt 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 tcccctgtcacctccccctttatcttagtcccttttagaaaagatgaacatcggtggctt 504

                                                                       
Query: 305 ctgccttttctagacctcgtctccatcatgataagttacttttaaacctttgtccttgtg 364
           ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 ctgccttttctagaccttgtctccatcatgttaagttacttttaaacctttgtccttgtg 564

                                                                       
Query: 365 aattaaaacaaacacctggtcaaacagctgctatatatttttatagttcatagcagtgtt 424
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 565 aattaaaacaaacacctggtcaaacaactgctatatatttttatagttcatagcagtgtt 624

                                                                       
Query: 425 tttgcttgaagattgctctgctgaatgttggagtggctctgttgttcactagcagggtaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tttgcttgaagattgctctgctgaatgttggagtggctctgttgttcactagcagggtaa 684

                                                                       
Query: 485 atatttagcagttacttcttaagtcttagtgcaaacacaaatcatctagggacggtgaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atatttagcagttacttcttaagtcttagtgcaaacacaaatcatctagggacggtgaca 744

                                                                       
Query: 545 aagtgcagtgatactcagctggcttgggataggcctcagacacacttctaaagcttcaca 604
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagtgcagtgctactcagctggcttgggataggcctcagacacacttctaaagcttcaca 804

                                             
Query: 605 cctgtgtgaacacccatgtttaacattttggaag 638
           ||||||||||||||||||||||||||||||||||
Sbjct: 805 cctgtgtgaacacccatgtttaacattttggaag 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no521_h23.g1 MSMg01no521_h23.g1 CHROMAT_FILE:
MSMg01no521_h23.g1 PHD_FILE: MSMg01no521_h23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:51 2005
         (571 letters)



>mm_chr19_36688596_36689566
          Length = 971

 Score =  787 bits (407), Expect = 0.0
 Identities = 419/423 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagtcatatgaacaagcaagccacattctcttctgttctgctacagatggaggtcagag 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 taagtcctatgaacaagcaagccacattctcttctgttctgctacagatggaggtcagag 364

                                                                       
Query: 61  cttaccgtatggtcaggtctgtcttcgcatagccatcgtactgtgtactcctctgcagtg 120
           |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 363 cttaccgtatggtcaggtctgtcttcgcatagccgtcgtactgtgtgctcctctgcagtg 304

                                                                       
Query: 121 catgcatatccagttcaggactgccacaaaccaggatttctacttcttctggacgaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 catgcatatccagttcaggactgccacaaaccaggatttctacttcttctggacgaagca 244

                                                                       
Query: 181 gctatcaataatcacaaaaaccataattcaaaatgatagtcttgccgggcagtggcggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gctatcaataatcacaaaaaccataattcaaaatgatagtcttgccgggcagtggcggtg 184

                                                                       
Query: 241 ccctcctttaatcccagcactcgggaggcagaggcaggcggatttctgagtttgaggcca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 183 ccctcctttaatcccagcactcgggaggcagaggcaggcggatttctgagttcgaggcca 124

                                                                       
Query: 301 gcctggtctacaaagtgagttccaggacagccagggctgcacagagaaaccctgtcttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gcctggtctacaaagtgagttccaggacagccagggctgcacagagaaaccctgtcttga 64

                                                                       
Query: 361 aaatccaaatttaaaaaaatgatagtcttaaatgaaatttgaagtgtttttattgcagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  aaatccaaatttaaaaaaatgatagtcttaaatgaaatttgaagtgtttttattgcagaa 4

              
Query: 421 tca 423
           |||
Sbjct: 3   tca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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