Query= MSMg01no522_a10.b1 MSMg01no522_a10.b1 CHROMAT_FILE:
MSMg01no522_a10.b1 PHD_FILE: MSMg01no522_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:31 2005
(576 letters)
>mm_chr19_8883800_8884770
Length = 971
Score = 1054 bits (545), Expect = 0.0
Identities = 564/573 (98%), Gaps = 5/573 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagtatatagccagactggccttatagtaatccttctgcctcagcactcttgag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtatatagccagactggccttatagtaatccttctgcctcagcactcttgag 263
Query: 64 tgctgaaatcacagacatatgctaactttagcagtttaagaagtctacaagataaaatag 123
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 tgctgaaatcacagacatatgctaactttagcagtttaagaagtctgcaagataaaatat 323
Query: 124 tctactttacttagttctgtccttgtatttttttaggtttggtagaaaagctttttatct 183
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tc-----tacttagttctgtccttgtatttttttaggtttggtagaaaagctttttatct 378
Query: 184 tgttggatatattatttaaattatggggaggaacatagaagcacagagtattaggagagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgttggatatattatttaaattatggggaggaacatagaagcacagagtattaggagagt 438
Query: 244 tttaggtattattaataagctagttggtcccaccccaagaaacatatttggtttttgatt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tttaggtattattaataagctagttggtcccaccccaagaaacatatttggtttttgatt 498
Query: 304 atataatggctagcgacacatgcttattatctctgcttataaaggtggaggcctactaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 atataatggctagcgacacatgcttattatctctgcttataaaggtggaggcctactaca 558
Query: 364 tggtcttagctactaattgtcagccatgacataaagaggatccagggtaaacagaacgac 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 559 tggtcttagctactaattgtcagccatgacataaagaggatccagggtaaacagaatgac 618
Query: 424 agaccagccaccagtagctgaatgccaccgaggcaaggcaaggcaagacaaccctaggtt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agaccagccaccagtagctgaatgccaccgaggcaaggcaaggcaagacaaccctaggtt 678
Query: 484 tgcacccatgagtgacacagcttcttcaggattctatcaggtgcttccaacacactaagc 543
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 679 tgcacccatgagtgacacagcttcttcaggattctatcaggtgcttccaacacactaaac 738
Query: 544 aataaacatctttccttgtactttctttcctct 576
|||||||||||||||||||||||||||||||||
Sbjct: 739 aataaacatctttccttgtactttctttcctct 771
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 971
Length adjustment: 10
Effective length of query: 566
Effective length of database: 961
Effective search space: 543926
Effective search space used: 543926
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_a10.g1 MSMg01no522_a10.g1 CHROMAT_FILE:
MSMg01no522_a10.g1 PHD_FILE: MSMg01no522_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:55:31 2005
(539 letters)
>mm_chr19_9040547_9041487
Length = 941
Score = 1019 bits (527), Expect = 0.0
Identities = 537/541 (99%), Gaps = 2/541 (0%)
Strand = Plus / Minus
Query: 1 cttttgttcctgttcgggttttttctgtaaagggtctgtctgttcagctggggcccacgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cttttgttcctgttcgggttttttctgtaaagggtctgtctgttcagctggggcccacgg 682
Query: 61 ccgaaaacatctgaaagtaggtctgctccgattaaactccgtgctgttaaaacttacaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccgaaaacatctgaaagtaggtctgctccgattaaactccgtgctgttaaaacttacaca 622
Query: 121 acaaagcagcacggaccaacttgccacgtcatcagcaccactcaggcttggctgcgcccc 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 acaaagcagcacggaccaacttgccacgtcaccagcaccactcaggcttggctgcgcccc 562
Query: 181 agagggtcgggtaaggcagcccagttctgatacaatagtttacacatatccaaatttgaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agagggtcgggtaaggcagcccagttctgatacaatagtttacacatatccaaatttgaa 502
Query: 241 aataaatcttgactccagcttatgggcaatttgaactctctttcacgttaaaggatagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataaatcttgactccagcttatgggcaatttgaactctctttcacgttaaaggatagaa 442
Query: 301 aagacaaaccctaaacccaaatttgtggttcccatcacctggagcagcaggacaagtctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagacaaaccctaaacccaaatttgtggttcccatcacctggagcagcaggacaagtctc 382
Query: 361 gtgtgggcaaaggttgttctcagaaatcagtggctttgcctcgtggaggtggcactccct 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 gtgtgggcaaaggttgttctcagaaatcagtgcctttgcctcgtggaggtggcactccct 322
Query: 421 aggaaagtgctggcaagtgggaaggagagctctgaagtggaagtcat--gactgttttag 478
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 aggaaagtgctggcaagtgggaaggagagctctgaagtggaagtcataggactgttttag 262
Query: 479 agtagtcaggccagaagctacattgaggcaaagaaaaaaggcgttaccaggaggaaaaca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtagtcaggccagaagctacattgaggcaaagaaaaaaggcgttaccaggaggaaaaca 202
Query: 539 a 539
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 941
Length adjustment: 10
Effective length of query: 529
Effective length of database: 931
Effective search space: 492499
Effective search space used: 492499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
