Query= MSMg01no522_p05.b1 MSMg01no522_p05.b1 CHROMAT_FILE:
MSMg01no522_p05.b1 PHD_FILE: MSMg01no522_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:42 2005
(522 letters)
>mm_chr19_9006608_9007529
Length = 922
Score = 698 bits (361), Expect = 0.0
Identities = 444/511 (86%), Gaps = 63/511 (12%)
Strand = Plus / Minus
Query: 5 gaattccagaggtcactatcactggatgataagctaacaatagctcttcagagaacagag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 451 gaattccagaggtcactatcactggatgataagctaacaatagctcttcagagaacatag 392
Query: 65 tagaaggtgagaaaggacaaggctggagtagaccttcaggtccactaagacagtgacccc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tagaaggtgagaaaggacaaggctggagtagaccttcaggtccactaagacagtgacccc 332
Query: 125 acaccagcaggcttcctggcactaggatgctacaggagtaggcagagcaggactctgtag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 acaccagcaggcttcctggcactaggatgctacaggagtaggcagagcaggactctgtag 272
Query: 185 ggaatggggattggctggaactctgaggatagccactgggaaagatcaccagagctgcta 244
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ggaatggggattggctgaaactctgaggatagccactgggaaagatcaccagagctgcta 212
Query: 245 ggtatcttcccaacactctggaggccaagaaaggactatcataccttttaggccagtctg 304
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 ggtatcttcccaacactctggaggccaagaaaggactatcatacc--------------- 167
Query: 305 ggctacaaagtgaattctaggccagctcaggctatagtatgagaccctgtcctttttttt 364
||||||||||||| ||
Sbjct: 166 ---------------------------------------tgagaccctgtcc------tt 152
Query: 365 tttttttttttt--tatcttttattaggtattttcctcatttacatttccaatgctatcc 422
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 ttttttttttttaatatcttttattaggtattttcctcatttacatttccaatgctatcc 92
Query: 423 caaaagtcccccataccctccccc-ccctcccctacccacccactcccactttttggcgc 481
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 91 caaaagtcccccataccctcccccgccctcccctacccacccactcccactttttggccc 32
Query: 482 tggcgtttccctgtactggggcatataaagt 512
||||||| |||||||||||||||||||||||
Sbjct: 31 tggcgttcccctgtactggggcatataaagt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space: 466944
Effective search space used: 466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no522_p05.g1 MSMg01no522_p05.g1 CHROMAT_FILE:
MSMg01no522_p05.g1 PHD_FILE: MSMg01no522_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:42 2005
(618 letters)
>mm_chr19_8820467_8821484
Length = 1018
Score = 1120 bits (579), Expect = 0.0
Identities = 609/619 (98%), Gaps = 1/619 (0%)
Strand = Plus / Plus
Query: 1 agagttgtgagtttttttgttagtttgtttttgagatagggtctactatatagacccagc 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 agagttgtgagtttttttcttagtttgtttttgagatagggtctactatatagacccagc 259
Query: 61 tggccctgaactcatagattctatctatctgcttctgcatcctaagtattgagattaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tggccctgaactcatagattctatctatctgcttctgcatcctaagtattgagattaaag 319
Query: 121 atgtgcaccaccacatctgcttaaaactttaaaaaaaaa-tatgaatgagtgttttgtgt 179
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 320 atgtacaccaccacatctgcttaaaactttaaaaaaaaaatatgaatgagtgttttgtgt 379
Query: 180 gtctggtgcttatgagatcagaacatggcattggatactctagagttgtagcagcagata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtctggtgcttatgagatcagaacatggcattggatactctagagttgtagcagcagata 439
Query: 240 gttgttggaagttgaatctgtgtcttctacaagagtagtaagtgcccgctttccagcctg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttgttggaagttgaatctgtgtcttctacaagagtagtaagtgcccgctttccagcctg 499
Query: 300 tttgtattttaaggtaaagtctcgggtcctgagagatggctcaccggttaagagcactgg 359
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 500 tttgtattttaaggtaaagtctcggggcctgagagatggctcagtggttaagagcactgg 559
Query: 360 ctgatcttccagagaaccgaagttcaattctcagcatccacatggcacctcccaactgtc 419
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 560 ctgatcttccagagaaccggagttcaattctcaacatccacatggcacctcccaactgtc 619
Query: 420 tgtaactccaagtgcgttagggatctgacatccttacatagacatacataaggcaaaaca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgtaactccaagtgcgttagggatctgacatccttacatagacatacataaggcaaaaca 679
Query: 480 tcaatttacttaaaaataaatctttaaaacaaaatagtctcattctgtaacttttagact 539
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 680 tcaatttacttaaaaataaatctttaaaacaaaatagtctcattctgtaacttatagact 739
Query: 540 ggccttacattcatcacaggttacctgcctcacgtgggacttttaagtataagctaccat 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 740 ggccttacattcatcacaggttacctgcctcacgtgggatttttaagtataagctaccat 799
Query: 600 gactagctaggcatctggt 618
|||||||||||||||||||
Sbjct: 800 gactagctaggcatctggt 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
