Query= MSMg01no523_a02.b1 MSMg01no523_a02.b1 CHROMAT_FILE:
MSMg01no523_a02.b1 PHD_FILE: MSMg01no523_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:47 2005
(196 letters)
>mm_chr19_25708943_25709538
Length = 596
Score = 337 bits (174), Expect = 4e-97
Identities = 186/190 (97%)
Strand = Plus / Plus
Query: 5 gaattcacctcctttatcttgttgcttgaaccagttattgctgaagaaaaaagagattta 64
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctcctgtatctagttgcttgaaccagttattgctgaagaaaaaagagattta 264
Query: 65 aaaaaaattgtcattctgtatttgctatctgatttttttgtttgtttgttttatagtagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaaaaattgtcattctgtatttgctatctgatttttttgtttgtttgttttatagtagt 324
Query: 125 tagttttattgagcactttgtaaacggagacgaatacactgacattagagttaaccactt 184
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 325 tagtgttattgagcactttgtaaacggagacgaacacactgacattagagttaaccactt 384
Query: 185 cttcacgttg 194
||||||||||
Sbjct: 385 cttcacgttg 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space: 110544
Effective search space used: 110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no523_a02.g1 MSMg01no523_a02.g1 CHROMAT_FILE:
MSMg01no523_a02.g1 PHD_FILE: MSMg01no523_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:56:47 2005
(564 letters)
>mm_chr19_25863550_25864512
Length = 963
Score = 963 bits (498), Expect = 0.0
Identities = 546/562 (97%), Gaps = 1/562 (0%)
Strand = Plus / Minus
Query: 3 cagatctccacttgagtgactccagctgactaataaagtgtaactaagtagggagagaaa 62
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 763 cagatctccacttgagtgactccagctgactaataaagtgtaactaagaagggagagaaa 704
Query: 63 aacccaatccatcagcaacatcaccaggtttgctgtgtgcgttctgctgtgaagaaggaa 122
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aatccaattcatcagcaacatcaccaggtttgctgtgtgcgttctgctgtgaagaaggaa 644
Query: 123 cctacatctcacgccagtaacacatctgctccaccaaacgccatcggtccatcagccagc 182
||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 643 cctacatctcacgccagtaacacatctgctccaccaagcaccgtcggtccatcagccagc 584
Query: 183 tgtgagataaaacaggagaatcctcgtgcgaaagcttctttgacaagtgatagcacttga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tgtgagataaaacaggagaatcctcgtgcgaaagcttctttgacaagtgatagcacttga 524
Query: 243 ggcttaaatcccattttcccatgacaaaactttcctcagtagatgccctgatccacccag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggcttaaatcccattttcccatgacaaaactttcctcagtagatgccctgatccacccag 464
Query: 303 tcagcactgaataaacacatttgttagacttcccagaattttaagaagacagtgtgttaa 362
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tcagcactgaataaacatatttgttagacttcccagaattttaagaagacagtgtgttaa 404
Query: 363 tagggaatcagtttgatacatgcctggccttgccttcctctatactgggggctttcccac 422
|||||||||||||||||| ||||||||||||||| ||| ||||||||| |||||| ||
Sbjct: 403 tagggaatcagtttgatatgtgcctggccttgcctccctttatactgggt-ctttcctac 345
Query: 423 caagggtgatcactctccggacttcactaaccacttctttgctgaaaacttacaggtccc 482
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 344 caagggtgatcactctccagacttcactaaccacttctttcctgaaaacttacaggtccc 285
Query: 483 ccaactcccatgccccagttgcccgttcctctcccacagatgggccaccacttcttctcc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ccaactcccatgccccagttgcccgttcctctcccacagatgggccaccacttcttctcc 225
Query: 543 cttccccggacctctccttcaa 564
||||||||||||||||||||||
Sbjct: 224 cttccccggacctctccttcaa 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 963
Length adjustment: 10
Effective length of query: 554
Effective length of database: 953
Effective search space: 527962
Effective search space used: 527962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
