Query= MSMg01no523_m23.b1 MSMg01no523_m23.b1 CHROMAT_FILE:
MSMg01no523_m23.b1 PHD_FILE: MSMg01no523_m23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:51 2005
(598 letters)
>mm_chr19_54726738_54727734
Length = 997
Score = 1002 bits (518), Expect = 0.0
Identities = 576/596 (96%), Gaps = 6/596 (1%)
Strand = Plus / Plus
Query: 4 gaattctgactacattcacggaggcagcctgctaggttcaatatttttagcatgccagtc 63
|||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctgactacaaccagggaggcaccctgctaggttcaatatttttagcatgccagtc 266
Query: 64 tgctgtctctagtaaccagagtgtgaaactaaacaacttctagatcatcagccaaaaaca 123
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgctgtctttagtaaccagagtgtgaaactaaacaacttctagatcatcagccaaaaatg 326
Query: 124 atcacatatagacaaatcattcacatctctcttaatcttcatgcctactttcaacttaaa 183
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atcacatatacacaaatcattcacatctctcttaatcttcatgcctactttcaacttaaa 386
Query: 184 acacagaagagaaaaccaagcttgcacttcaactaggatgcacaggctacctcattttta 243
|||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 387 acacagaagagaaa-ccaagcttgcacttcaactaggatgcattggctaccccattttta 445
Query: 244 attgccacctgctttcccaaatgaataaaatctccaattagaggtttccattattactca 303
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 446 attaccacctgctttcccaaatgaataa--tctccaattagaggtttccattattactca 503
Query: 304 gcctgctttgattgctctgataaaattcaagctgtgatggctgcctcacttgctattgca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcctgctttgattgctctgataaaattcaagctgtgatggctgcctcacttgctattgca 563
Query: 364 aacactgaaattaatctttggttatccttgggttggtctttatttacctcctcagaggag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aacactgaaattaatctttggttatccttgggttggtctttatttacctcctcagaggag 623
Query: 424 agaggaaggtaagagccttgtgacaagagtctcactgacccaaatgtgcagaggggaggg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agaggaaggtaagagccttgtgacaagagtctcactgacccaaatgtgcagaggggaggg 683
Query: 484 acacagggaggtgtgggtgattcagcagctgcactgccagaagttccgtgttcaggtatt 543
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 684 acacagggaggtgtgggtgattcagcagctgcactgccagaagttctgtgttcaggtatt 743
Query: 544 caaatc-tgcctttccaacgtcaagaactatacatgtcctccacataccttgtaga 598
|||||| | |||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 744 caaatcct-cctttcaaa-gtcaagaactatacatgtcctccacataccttgtaga 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 997
Length adjustment: 10
Effective length of query: 588
Effective length of database: 987
Effective search space: 580356
Effective search space used: 580356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_m23.g1 MSMg01no523_m23.g1 CHROMAT_FILE:
MSMg01no523_m23.g1 PHD_FILE: MSMg01no523_m23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:51 2005
(648 letters)
>mm_chr19_54831638_54832687
Length = 1050
Score = 1017 bits (526), Expect = 0.0
Identities = 613/650 (94%), Gaps = 17/650 (2%)
Strand = Plus / Minus
Query: 15 ggtcttttttgttgagtcttcttgagtac----------attcaggttgaggtcctgttt 64
||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 1050 ggtcttttttgttgagtcttcttgagtacattcagttttattcaggttgaggtcctgatt 991
Query: 65 gggttctgaccaattttatgagaggtgaaatgatgtgatttattggcaggcctggtcatg 124
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 990 gggttctgacaaattttatgagaggagaaatgatgtgatttattggcaggcctggtcatg 931
Query: 125 aagccgtccttccaggacattgataccacgagtctactcaatgtgttagtgtgcacatgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 930 aagccgtccttccaggacattgataccacgagtctactcaatgtgttagtgtgtgcatgg 871
Query: 185 gtttcctggccatctactgaagcatggggctttctcagggactgcatccagaaa-tgaag 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 870 gtttcctggccatctactgaagcatggggctttctcagggactgcatccagaaactg-ag 812
Query: 244 cccgtttcctgagcagtcatccgctgctcattagctccttggctactaggaagaaaacca 303
||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 811 cccgtttcccgagcagtcatctgttgctcattagctccttggctactaggaagaaaacca 752
Query: 304 tatttttaaatgaaaaaa--atgtaatatgaaatggaattatgacatgggagagaagtga 361
|||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||
Sbjct: 751 tatttttaaatgaaaaaaagatgtaatatgaaatgaaattatgacatggaagagaactga 692
Query: 362 actaccaagttaccacatggaagaaaaaccatcacccaggataatctgactctgattaag 421
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 691 acgaccaagttaccacatgggagaaaaaccatcacccaggataatctgactctgattaag 632
Query: 422 agaataagaaatgaaagcaagtgaatgtttgagcatgcaggacatgtttgttactgtcat 481
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 631 agaataagaaatgaaagcaagtgaatgtttgagcatgcagggcgtgtttgttactgtcat 572
Query: 482 ataactgacctggtgtcaagcaaaacacttgtccatttaactcacgagactttcctggaa 541
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 571 gtaactgacctggtgtcaaacaaaacacttctccatttaactcacgagactttcctggaa 512
Query: 542 ataaagacgactctgcttatgttaatatttcc---ttttttaagtagatattttcttcgt 598
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 511 ataaagacgactctgcttatgttaatatttcctttttttttaagtagatattttcttcgt 452
Query: 599 ttacaattcaaatgctatcctgaaagtcccttataccctcccctcgccct 648
|||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 451 ttacaattcaaatgctatcccgaaagtcccttataccctcccctcaccct 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1050
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1040
Effective search space: 663520
Effective search space used: 663520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
