Query= MSMg01no523_n08.b1 MSMg01no523_n08.b1 CHROMAT_FILE:
MSMg01no523_n08.b1 PHD_FILE: MSMg01no523_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:53 2005
(670 letters)
>mm_chr19_12150203_12151271
Length = 1069
Score = 1027 bits (531), Expect = 0.0
Identities = 646/703 (91%), Gaps = 36/703 (5%)
Strand = Plus / Minus
Query: 1 acatttatcgatgacgtaatgaggcaagaagtggcattacaaa----------------- 43
|||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 1000 acatttatcgatgatgtaatgaggcaagaagttgcattacaaaaagaaagaaagaaagaa 941
Query: 44 ------aaa-aaa-aaa-aaagaaagaaataaagagagagagagagaaagaaagaaaa-- 92
||| ||| ||| ||||||||||| ||||| ||| ||| ||||||||||||||
Sbjct: 940 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaata 881
Query: 93 ---agagccttctatcaaagctccaagcacccctccactagtccactgcactccattttt 149
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 880 aagagagcctcctatcaaagctccaagcacccctccattagtccactgcactccattttt 821
Query: 150 ctgtgatttctgtgtggctgtgccatttcaccactgtttgatattatttccctgcctctc 209
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 820 ctgtgatttctgggtggctgtgccatttcaccactgtttgatattatttcccttcctctc 761
Query: 210 ctgttgaaatttattcagacagtgacaaatgcttgtctccactgttaaagcttaaagttt 269
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 760 ctgttgaaatttatccagacagtgacaaattcttgtctccactgttaaagcttaaagttt 701
Query: 270 cctatagctgccctaaatagagccctgtgctttcatgacactaggatataattgtttgat 329
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 700 cctataactgccctaaatagagccctgtgctttcatgacactaggatataattggttgat 641
Query: 330 cccacaactgttgtcacactaaatatctgtattttcatcagactgaatactgttccagaa 389
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 640 cccacaactgttgtcacactaaatatctgtattttcatcagactgaatactgctccagaa 581
Query: 390 taacacctttgctacacctttgggcaatgtagcta-cctaagtctagtcccaactgtaca 448
|||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||
Sbjct: 580 taacacctttgctacacctttgtgcaatgtagctagcctacgtctagtcccaactgtaca 521
Query: 449 ataaggaccacaaccaatgtgtgaaaaattactgaaggactcattgattaaatgtatact 508
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 520 ataaggaccacaaccaatgtgtgaaaaattactg---gactcattgattaaatgtatact 464
Query: 509 tttgaaaagcctaataaacttggtgtcatgaatacaatcaaacctaatttagagaaatcc 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tttgaaaagcctaataaacttggtgtcatgaatacaatcaaacctaatttagagaaatcc 404
Query: 569 agatcacttttttga-catcagtttttgctgcacaatcttaggggactgcaaatgtgtgg 627
|||||||||| |||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 403 agatcactttattgaacatcagtttttgctgcacaatcttagggggctgcagatgtgtgg 344
Query: 628 gagagtggaagggtagatgatgtatccaagtctatctggaaac 670
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 343 gagagtggaaaggtagatgatgtatccaagtctatctggaaac 301
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1069
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1059
Effective search space: 698940
Effective search space used: 698940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no523_n08.g1 MSMg01no523_n08.g1 CHROMAT_FILE:
MSMg01no523_n08.g1 PHD_FILE: MSMg01no523_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:57:53 2005
(655 letters)
>mm_chr19_12009192_12010246
Length = 1055
Score = 1239 bits (641), Expect = 0.0
Identities = 655/667 (98%), Gaps = 12/667 (1%)
Strand = Plus / Plus
Query: 1 cagaaggactacaaagtgagaccctatctaaagattgccagggctagagaagatggtaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 cagaaggactacaaagtgagaccctatctaaagattgccagggctagagaagatggtaaa 248
Query: 61 atgtttgtttgaagatcagagtttacatcctgtgcattcacataaatgccaggcaggtat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 atgtttgtttgaagatcagagtttacatcctgtgcattcacataaatgccaggcaggtat 308
Query: 121 ggcaagccaatgctgaggagataagagattaggatccttggaggaacctggctagttagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggcaagccaatgctgaggagataagagattaggatccttggaggaacctggctagttagg 368
Query: 181 taagcctacttggctacctctgggttcaggtgggagatgatgcctcaatatagaaagtac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 taagcctacttggctacctctgggttcaggtgggagatgatgcctcaatatagaaagtac 428
Query: 241 tgaaagatggagaaaaacggccagcaatcaagccctggcatctccacactctcaaacagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tgaaagatggagaaaaacggccagcaatcaagccctggcatctccacactctcaaacagc 488
Query: 301 cttctcactggaaggtggcagtgttacagtaagttgggtatttcagcctaacattgctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cttctcactggaaggtggcagtgttacagtaagttgggtatttcagcctaacattgctgc 548
Query: 361 taaaagctgggcagtggtggcgcacacctttaatcccagcacttgggagccagaggcagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 taaaagctgggcagtggtggcgcacacctttaatcccagcacttgggagccagaggcagg 608
Query: 421 cggatttctgagtttgaggccagcctggtctacacagtgagttccaggacagccagagct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cggatttctgagtttgaggccagcctggtctacacagtgagttccaggacagccagagct 668
Query: 481 acacagagaaaccctgtctcaaaaacaaacaaacaaa------------acattgctgct 528
||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 669 acacagagaaaccctgtctcaaaaacaaacaaacaaacaaacaaacaaaacattgctgct 728
Query: 529 agaaattttgggaaacataattacttcactattttattatttgactaacagtccaagaga 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 agaaattttgggaaacataattacttcactattttattatttgactaacagtccaagaga 788
Query: 589 gagaaaggatgatggttaaaggattatatcaccatgttcccctacatttaaaggagcacc 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 gagaaaggatgatggttaaaggattatatcaccatgttcccctacatttaaaggagcacc 848
Query: 649 tttttaa 655
|||||||
Sbjct: 849 tttttaa 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1055
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1045
Effective search space: 674025
Effective search space used: 674025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
