BAC Information

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BAC

Clone NameMSMg01-523P05
Chromosome19 (Build37)
Map Location 58,930,208 - 58,930,564
singlet/doubletsinglet
Overlap geneHspa12a
Upstream geneAtrnl1, Gfra1, LOC100043503, 1700011F14Rik, Pnlip, Pnliprp1, Pnliprp2, 1700019N19Rik
Downstream gene6430537H07Rik, 4930506M07Rik, LOC668626, Vax1, LOC668627, Kcnk18, Slc18a2, Pdzd8, LOC100034727, LOC100043073, Emx2os, Emx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-523P05.T7 (MSMg01no523_p05.b1)MSMg01-523P05.TJ (MSMg01no523_p05.g1)
ACCAG594144AG594145
length739787
length of high quality
(start - end)
---349 (78 - 426)
definitionCHROMAT_FILE: MSMg01no523_p05.b1 PHD_FILE: MSMg01no523_p05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:02 2005CHROMAT_FILE: MSMg01no523_p05.g1 PHD_FILE: MSMg01no523_p05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTACTTATATTTGCGGCAGCGAACGACTACCATTTCCTAAAGGACCGTGG
AATTTATGAATGTTTCCTGTGCCCAGCTCTGTGCTAGGTCCATTAACATT
GTAACAATGTTATATGTTGTTGTTATTATTGTAACGATGCCTATGTTGTT
ATAGCTTGTAAGAATAAATGAAAATGTCCATAAGTTACAGGCATTTAGGA
ATGTGGATCTTTACTGTTTGCTGTTTTTTAAGAAAATTGAGTATAGGGTA
GAAGAATGCAATTACTAAAATGTGTTACAAATGTCATTTTAGTAGCCCTC
TGCATGCATTTAGCGTCTAGCATGAATAATTTCTTGGTGTCGGAGGAGTG
ATCTCTTGTTACCTACTCTCCTTCAGCCTATTCACTTGTTACTCTCCGCG
AATTAGCCACATTCTTTGGCAATTGTTTTAATAGATGAAGGCTTAGATTC
TGGTGATGTCTGTTAGTGAACGACAAGATGAAACAAAGTTGCTAGTCTGC
AGTTTCCTCTGGAAATGTCTGAGTGCCCCAATCTTAGATCTGAGAGAGGC
TGGGTTTTCCTGTTACTTGCATGAACATTGTGTATTACAGAGTACGGAAT
CCTTTATCTCATTTCTTTCTGAAAGCCTGCTCCCTGTTACGTGAACGAAC
TTCAGATACCAGTGAACCAGTCTGAAAATTCGGAACTTTCCCCGCCTCCT
CTTTTTCATCTTTTCCCCCTCTATTTCCCATTCTTATCG
NCACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCAGTAAGTGATAAAGTCATTT
CCTTCCCATCCCTTTATCTCTGTCTGTTTCCAACAGACCCAGGCAAGCAC
CGTGTATTCTCATCACAAACTCAGGAAGCAAAGTCTAGCTGGTGCCTGCA
TTCCAGGGGATGTTAATTCTCCCAAACCACCATCAGTGTGGCTGAACATC
TGGGGAAGATAGACACCACGGGCTTAGACAAGCCTGGGGAAGCAGAGAGG
GTCTGTAGCGATTATCTGTCTGGGTCAGGGACCCTGTTGGCTGGGGAGTC
TCCTCTACTCCCCTAACACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCATTCTCGTCTTATCT
CTTCTCTTTTATCCAGTTTTTTAATTATCACCTCCCTTTAATTATTTTGC
ATCCATATATTATCTCCTCATTTCCTATAGTTATTATTTTTTTCTCCCCC
TATTCCTTTCCCTCTTGTTCTCTCTTTTTCTCCTCTAGCTATGTTCTTTT
TTTATTTTCTCTCCACCTCTTTTCTCCTTACTTATTATCTAATCACTACC
ACATACTTTTTTTTTTTTTATCATTTTTCTTTCTTCGCTAATAACTTTTA
TCTTAGTCAATATCCTACCCAAAAATAATATCTTCTCGCCTATATTTCCC
ACCCCCCGATGAACCATTTTNTTTACTTCTGTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no523_p05.g1 MSMg01no523_p05.g1 CHROMAT_FILE:
MSMg01no523_p05.g1 PHD_FILE: MSMg01no523_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:03 2005
         (349 letters)



>mm_chr19_58930008_58930756
          Length = 749

 Score =  625 bits (323), Expect = 0.0
 Identities = 345/357 (96%), Gaps = 8/357 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagtaagtgataaagtcatttccttcccatccctttatctctgtctgtttccaacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcagtaagtgataaagtcatttccttcccatccctttatctctgtctgtttccaacaga 260

                                                                       
Query: 61  cccaggcaagcaccgtgtattctcatcacaaactcaggaagcaaagtctagctggtgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaggcaagcaccgtgtattctcatcacaaactcaggaagcaaagtctagctggtgcct 320

                                                                       
Query: 121 gcattccaggggatgttaattctcccaaaccaccatcagtgtggctgaacatctggggaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcattccaggggatgttaattctcccaaaccaccatcagtgtggctgaacatctggggaa 380

                                                                       
Query: 181 gatagacaccacgggcttagacaagcctggggaagcagagagggtctgtagcgattatct 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 381 gatagacaccacgggcttagacaagcctggggaagcagagagggtctgtagcgactgtct 440

                                                                       
Query: 241 gtctgggtcagggaccctgttggctggggagtctcctctactcccctaacac-------- 292
            |||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 441 ctctgggtcagggaccctgttggctggggagtctcctctactcccctaacacacacacac 500

                                                                    
Query: 293 tctctctctctctctctctctctctctctctctctctctctctctctctctctctct 349
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcactctctctctctctctctctctctctctctctctctctctctctctctctctct 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 116
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 749
Length adjustment: 9
Effective length of query: 340
Effective length of database: 740
Effective search space:   251600
Effective search space used:   251600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)