BAC Information

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BAC

Clone NameMSMg01-524B12
Chromosome19 (Build37)
Map Location 33,876,243 - 33,876,897
singlet/doubletsinglet
Overlap genenone
Upstream genePten, B430203M17Rik, 6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055
Downstream geneEG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22, Stambpl1, Acta2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524B12.T7 (MSMg01no524_b12.b1)MSMg01-524B12.TJ (MSMg01no524_b12.g1)
ACCAG594253AG594254
length742736
length of high quality
(start - end)		624 (41 - 664)653 (69 - 721)
definitionCHROMAT_FILE: MSMg01no524_b12.b1 PHD_FILE: MSMg01no524_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:15 2005CHROMAT_FILE: MSMg01no524_b12.g1 PHD_FILE: MSMg01no524_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:15 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGA
AGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCAATTCTCGTTCTTACAGAGCAAGCCATTGCTGTTCTGTTC
AGGAATCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTTTCTC
CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACT
TAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTT
CTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTC
TTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCAT
AGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACT
TGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCCCTGTA
GTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAAGTTCTTTTATCCT
TGAGAAGAGTTTTGCTATCCTAGNTTTTTGTTATTCAGATGA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGAGAACACATAGGAATGATACAAAATTAA
ATTTAGACAAACTGAAAATGGTTTTCTAGATACATGACTTGCAGGGAGAT
GGATTGCTCTTCATGTGAATACCATTTAAACATTTTTTTTCATTTTCATT
ATACAAACATCACCATAGTTTATTAACTGGAATATTTTTAAATCCCTTGT
GTTTTTAAGACAGTTGATATGGATTTGTACTCATTAGGAAATTTAGTTAG
CAAGAGCATGTAGAGGGAATGGAAATGTATTATACAGGAAGACACTAGGC
AACCTCCAGAATTCTCCACTAATGACTTTGTTACAGTGTTCTAGTAATAG
AAGTATTTTATAGACGTCAAGACCTTACTCTATAGTCATTTCATTTTGGT
TGTCCTGGATTGATATCATCGTAGAATAGAACCACTGGTTCCTTTAGGGC
AACAAAGATGAGCTGTCTAATGATGGTATTAAAGAAATAATAGCCAGAGC
CATTACCAGTTTAAGCATGAAACAAACAAAATAGAGGAATAAAATCAAAC
CTACCAAAGTGAAAATCTTCTTAAGTCAAAAATAGAATCATTCAACAAGC
TTAAAAAATCATCCCCACATTTGGAGAGAGGTCTCATGGACATATCTACC
TAAATCTATAGGTGACTAACAGTAAATGTGTCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_b12.g1 MSMg01no524_b12.g1 CHROMAT_FILE:
MSMg01no524_b12.g1 PHD_FILE: MSMg01no524_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:15 2005
         (653 letters)



>mm_chr19_33876043_33877097
          Length = 1055

 Score = 1247 bits (645), Expect = 0.0
 Identities = 652/655 (99%), Gaps = 2/655 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgagaacacataggaatgatacaaaattaaatttagacaaactgaaaatggttttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 tttgagaacacataggaatgatacaaaattaaatttagacaaactgaaaatggttttcta 796

                                                                       
Query: 61  gatacatgacttgcagggagatggattgctcttcatgtgaataccatttaaaca--tttt 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 795 gatacatgacttgcagggagatggattgctcttcatgtgaataccatttaaacatttttt 736

                                                                       
Query: 119 ttttcattttcattatacaaacatcaccatagtttattaactggaatatttttaaatccc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ttttcattttcattatacaaacatcaccatagtttattaactggaatatttttaaatccc 676

                                                                       
Query: 179 ttgtgtttttaagacagttgatatggatttgtactcattaggaaatttagttagcaagag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ttgtgtttttaagacagttgatatggatttgtactcattaggaaatttagttagcaagag 616

                                                                       
Query: 239 catgtagagggaatggaaatgtattatacaggaagacactaggcaacctccagaattctc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 catgtagagggaatggaaatgtattatacaggaagacactaggcaacctccagaattctc 556

                                                                       
Query: 299 cactaatgactttgttacagtgttctagtaatagaagtattttatagacgtcaagacctt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cactaatgactttgttacagtgttctagtaatagaagtattttatagacgtcaagacctt 496

                                                                       
Query: 359 actctatagtcatttcattttggttgtcctggattgatatcatcgtagaatagaaccact 418
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 495 actctatagtcatttcattttggttgccctggattgatatcatcgtagaatagaaccact 436

                                                                       
Query: 419 ggttcctttagggcaacaaagatgagctgtctaatgatggtattaaagaaataatagcca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ggttcctttagggcaacaaagatgagctgtctaatgatggtattaaagaaataatagcca 376

                                                                       
Query: 479 gagccattaccagtttaagcatgaaacaaacaaaatagaggaataaaatcaaacctacca 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gagccattaccagtttaagcatgaaacaaacaaaatagaggaataaaatcaaacctacca 316

                                                                       
Query: 539 aagtgaaaatcttcttaagtcaaaaatagaatcattcaacaagcttaaaaaatcatcccc 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 aagtgaaaatcttcttaagtcaaaaatagaatcattcaacaagcttaaaaaatcatcccc 256

                                                                  
Query: 599 acatttggagagaggtctcatggacatatctacctaaatctataggtgactaaca 653
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 acatttggagagaggtctcatggacatatctacctaaatctataggtgactaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1055
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1045
Effective search space:   671935
Effective search space used:   671935
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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