Query= MSMg01no524_c18.b1 MSMg01no524_c18.b1 CHROMAT_FILE:
MSMg01no524_c18.b1 PHD_FILE: MSMg01no524_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:21 2005
(643 letters)
>mm_chr19_29847439_29848481
Length = 1043
Score = 1170 bits (605), Expect = 0.0
Identities = 632/643 (98%), Gaps = 5/643 (0%)
Strand = Plus / Plus
Query: 5 gaattcatagagctgcgactgctggcaaagggccatacaagatcaagctagtcaacattt 64
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 206 gaattcatagagctgtgactgctggcaaaggcccatacaagatcaagctagtcaacattt 265
Query: 65 tagcatggaggggagaggattcagaagcactacccataactgataagcaacagacaagtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tagcatggaggggagaggattcagaagcactacccataactgataagcaacagacaagtg 325
Query: 125 atggggacacggggaggaagagtcagttttgttaaagggtgtggcccctggtaggttggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atggggacacggggaggaagagtcagttttgttaaagggtgtggcccctggtaggttggc 385
Query: 185 catgctctactggctgctgacatacccagcagtatacacatgggcagcagggactcaaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 catgctctactggctgctgacatacccagcagtatacacatgggcagcagggactcaaca 445
Query: 245 ggttattttgaaaggagagagaagacacaaaaatgagggaaaagcttagtagaggtaaag 304
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 446 ggttattttgaaaggagagagaagacaggaaaatgaggggaaagcttagtagaggtaaag 505
Query: 305 ttggtaggaattaaagggaggagtcagggtaaataaaactacatagcatgtaattctcaa 364
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 506 ttggtaggaattaaagggaggagtcagggtaaataaa-ctacatagcatgtaattctcaa 564
Query: 365 aaaaattaacaagtactgatactgatgttagaatcaccagacactgtgatagctattgaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaaaattaacaagtactgatactgatgttagaatcaccagacactgtgatagctattgaa 624
Query: 425 gctatatggcatggtcaagtagttcacttaaactaggtgtgtgtggcacaagtgtgtaat 484
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctatatggcatggtcaaggagttcacttaaactaggtgtgtgtggcacaagtgtgtaat 684
Query: 485 tccagtacttgaagacaaaaggctacaagttcaaatctagtctggtttatgatagtgaat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tccagtacttgaagacaaaaggctacaagttcaaatctagtctggtttatgatagtgaat 744
Query: 545 tccatgttatccaaggctatcttta----gtgagagctggtctcaaacacaaaaaacaaa 600
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 745 tccatgttatccaaggctatctttatctagtgagagctggtctcaaacacaaaaaacaaa 804
Query: 601 atcaaacaacattaacaacaaaactcacttaacttgaaaggta 643
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 atcaaacaacattaacaacaaaactcacttaacttgaaaggta 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_c18.g1 MSMg01no524_c18.g1 CHROMAT_FILE:
MSMg01no524_c18.g1 PHD_FILE: MSMg01no524_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:21 2005
(590 letters)
>mm_chr19_30017135_30018116
Length = 982
Score = 1056 bits (546), Expect = 0.0
Identities = 576/590 (97%), Gaps = 8/590 (1%)
Strand = Plus / Minus
Query: 1 tccatgtagactaggctggtcttgaactcacagggattgattcatctacctctgcctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 tccatgtagactaggctggtcttgaactcacagggattgattcatctacctctgcctcca 822
Query: 61 agtgctgagattaaagtgcatataccaccatgcctggctgatagcaggaagcttttaacg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 agtgctgagattaaagtgcatataccaccatgcctggctgatagcaggaagcttttaacg 762
Query: 121 tgttaaacattcactgtactttgtgggcgtgattttctgactctgtgatgtgccatccaa 180
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 761 tgttaaacattcactgtacttt------gtgattttctgactctgtgatgtgccatccaa 708
Query: 181 agaaaaagagagtaaagaaaaccagtttgatggccaattaaaatcccagataaaatatgc 240
|||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 707 agaaaa--agagtaaagaaaaccagtttgatgtccaattgaaatcccagataaaatatgc 650
Query: 241 tgagaaaagagctggggtcacatttgagggatcagtacagcgtgtatacggttgaatgtg 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 649 tgagaaaagagctggggtcacatttgaggggtcagtacagcgtgtatacggttgaatgtg 590
Query: 301 ggccatccacacacttcaaagagctcttgtgtgtcagcgtgagaaacgtcatagttccaa 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 589 ggccatccacacacttcaaagagctcttgtgtgtcagcgtgagaaacatcatagttccaa 530
Query: 361 gtctcaaacacaaaaagtgtgagctgtcatcttttccaaagtactaatgtgtatggcggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gtctcaaacacaaaaagtgtgagctgtcatcttttccaaagtactaatgtgtatggcggc 470
Query: 421 ctctttggcctttaggaagttacgttaagtaaatattgaattggcattttaggtcaggga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ctctttggcctttaggaagttacgttaagtaaatattgaattggcattttaggtcaggga 410
Query: 481 cgtccatcggcatgagcccatgggacaccacgtgaagattttcttttcagtttggtgtat 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 409 cgtccatcggcatgagcccatgggacaccgcgtgaagattttcttttcagtttggtgtat 350
Query: 541 tttctacatctggtcaaccagcaagtcgtttatcgagacacccctgtcct 590
||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 349 tttctacatctggtcaaccagcaagtcctttatcgagacacccctgtcct 300
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 982
Length adjustment: 10
Effective length of query: 580
Effective length of database: 972
Effective search space: 563760
Effective search space used: 563760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
