Query= MSMg01no524_i08.b1 MSMg01no524_i08.b1 CHROMAT_FILE:
MSMg01no524_i08.b1 PHD_FILE: MSMg01no524_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:49 2005
(656 letters)
>mm_chr19_11318841_11319897
Length = 1057
Score = 1216 bits (629), Expect = 0.0
Identities = 647/653 (99%), Gaps = 1/653 (0%)
Strand = Plus / Minus
Query: 5 gaattccactatgccatatgccagtactcaaacatatgagtctatggtggccattctatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 gaattccactatgccatatgccagtactcaaacatatgagtctatggtggccattctatt 870
Query: 65 caaaccagcacaagaagctgaggagaaaaagcctcagggggaaaggaagaagcagaacac 124
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 869 caaaccagcacaagaagctgaggagaaaaagcctcaggggaaaaggaagaagcagaacac 810
Query: 125 ggctgcagagaaactctctagaattagagccgagcagaggccattggatccagggttagg 184
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 809 ggctgcagagaaactctctagaattagagccgagcagaggccactggatccggggttagg 750
Query: 185 ggaagcaactttgggaaagcattaataagaaaagacagtacagtttgtggaaagtaatat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ggaagcaactttgggaaagcattaataagaaaagacagtacagtttgtggaaagtaatat 690
Query: 245 gctatgaaaaattcacactgagagctgactctgcctttcagatgtctttactttaaagga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gctatgaaaaattcacactgagagctgactctgcctttcagatgtctttactttaaagga 630
Query: 305 gagtgatgggcaatggtttgcataagaatctgggcaagaaattgcccagaaggctacctc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gagtgatgggcaatggtttgcataagaatctgggcaagaaattgcccagaaggctacctc 570
Query: 365 ttttagcaaaataagtgaaatgtattgcctgctaccatgtagtgccattctaagggcaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttttagcaaaataagtgaaatgtattgcctgctaccatgtagtgccattctaagggcaga 510
Query: 425 gacgagatgtgaatagcgttgagagactccattgggtctacagaattcagatgtgtccgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 509 gacgagatgtgaatagcgttgagagactccattgggtctacagaattcagatgtgtcagt 450
Query: 485 ctgcatcttcttgggagtggttaaagcaaggtatgtaatgcatacgtggcactaaagatc 544
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ctgcatcttcttggcagtggttaaagcaaggtatgtaatgcatacgtggcactaaagatc 390
Query: 545 agtcatgtcactcctggtttgttgatgtcccactggcg-gttgacagtagtgtgtggcat 603
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 389 agtcatgtcactcctggtttgttgatgtcccactggcgtgttgacagtagtgtgtggcat 330
Query: 604 tcacggtgtgcttgatcctcagctttgacaggaataatcactatggctacaca 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcacggtgtgcttgatcctcagctttgacaggaataatcactatggctacaca 277
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1057
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1047
Effective search space: 676362
Effective search space used: 676362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_i08.g1 MSMg01no524_i08.g1 CHROMAT_FILE:
MSMg01no524_i08.g1 PHD_FILE: MSMg01no524_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:49 2005
(632 letters)
>mm_chr19_11252111_11253142
Length = 1032
Score = 1133 bits (586), Expect = 0.0
Identities = 622/634 (98%), Gaps = 4/634 (0%)
Strand = Plus / Plus
Query: 1 aataggcacatatagtgaccatgtacctatgttccagtacacgttatttcaggatctggg 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataggcacatataatgaccatgtacctatgttccagtacacgttatttcaggatctggg 260
Query: 61 ggaatttgcagagactgaattgcacggttcttttgcgtagatagacattttcatgttatc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 ggaatttgcagagactgaattgcacggttcttttgcgtagatagacattttcatgttacc 320
Query: 121 tcaggaaagctgtaggaactctttcccttccttatcaaatggagtcagtttctgttttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaggaaagctgtaggaactctttcccttccttatcaaatggagtcagtttctgttttca 380
Query: 181 acataggatcagagtgccttggaagttgctgggaggaagaataattagcagcctggatgc 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acataggatcagagggccttggaagttgctgggaggaagaataattagcagcctggatgc 440
Query: 241 ctagagactgtgcaaatggcctggggcattatgaaaaattagttttgcttagactttaat 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagagactgcgcaaatggcctggggcattatgaaaaattagttttgcttagactttaat 500
Query: 301 ttttttattttattattttttattagatattttctttatatacacttcaaattttaaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttttttattttattattttttattagatattttctttatatacacttcaaattttaaatg 560
Query: 361 ctatcccaaaagttccccataccctccccaccccccaactcccctacctgcctactccta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctatcccaaaagttccccataccctccccaccccccaactcccctacctgcctactccta 620
Query: 421 cttcttggccctggcgttcccctgtactggggcatataaagtttgcacgaccaatgggcc 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 621 cttcttggccctggcgttcccctgtactagggcatataaagtttgcacgaccaatgggcc 680
Query: 481 tctcttcccagtgatggcagactaggccatcttctgatacatatgcagctagagacacga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 tctcttcccagtgatggcagactaggccatcttctgatacatatgcagctagagacatga 740
Query: 541 gctccggaggg-ggggggtactggttagttcatattgttgttccacctatagggttgcag 599
|||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gctctgg-gggtggggggtactggttagttcatattgttgttccacctatagggttgcag 799
Query: 600 aa-ccgtttagctccttgggtacttgccctagct 632
| || ||||||||||||||||||||||||||||
Sbjct: 800 attcc-tttagctccttgggtacttgccctagct 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space: 635684
Effective search space used: 635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
