BAC Information

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BAC

Clone NameMSMg01-524J17
Chromosome19 (Build37)
Map Location 15,358,560 - 15,359,160
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667433, Tle4, EG433225, EG635497
Downstream genePomc-ps1, LOC667482, Psat1, LOC100041424, Cep78, LOC100042048, Gnaq, E030024N20Rik, LOC624438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-524J17.T7 (MSMg01no524_j17.b1)MSMg01-524J17.TJ (MSMg01no524_j17.g1)
ACCAG594643AG594644
length794775
length of high quality
(start - end)
259 (37 - 295)601 (68 - 668)
definitionCHROMAT_FILE: MSMg01no524_j17.b1 PHD_FILE: MSMg01no524_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:56 2005CHROMAT_FILE: MSMg01no524_j17.g1 PHD_FILE: MSMg01no524_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:58:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCGCTATACGACTCCTATATTCAGAGGNATCGCGGAATTCTACAT
GGGTACTTGGTTTTAAGATGATTTTGAAAGTGTATGGGGGGGGGTGAGAG
AGAAAGAGAGAGGGAGAGAGAGAGAATGTATAACGTGTGAAGGCCAGAGG
TCAATGCTGACCTGACAAAGTTTCTCAGGGAACTTGGAAAGGCCCATTCA
GCTAAAATGGCTGGCCAGTGAGCTCCAGGTATTCACATGTTTCTCCAATG
TCTGGGATTACAGACATATATCATCACTTACAGATTGTTACATGTGTTTG
GTATCTGAATTAATGTCCTAGCGTTTATCGCGTGCCCTATTTCTGTACAT
CCTACAATCTATTAGTTTTTATAAATCCTCATCTATTTATTTATTTAATT
ATTTAGTTCTTCCCCTATCGATCTATCTATCTTATTTTCTTATAGTGTTT
TTATCATGGCTTACTGTTAAATTATTTGAATACAAAGATCGCTTCTTTAT
TTGTCCAGTTTATCTTGATTTACTACCCATCTGGATCACGAATTTTAAGG
TTCCCCTCCAACCATATCCTGTACCTCATAATATACATTTTATGCATTCC
TTCCTAGCTCTTCCACTATATCATTTCCGGCGCCACAGTTTACATTGGAA
TCTCCAGTGTTTAATGGCGTTAAAGCGTGTTTCTATTTTTTTTGAAAATA
CTCCCTAACCTATTTCTTTGTGCATCAACATCTCGCACTCTCCTAAGTAC
CTATTTCTCTTACTCATTTGGACTTTCTTTGCTCTCCTACTGCC
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTGTGTTTCAGGAAAATTAGACATGTGGTTTG
ACATCCTAGGCAAACACCTAAAAATGTATAGGCAGTTCAAGGAACAATCA
ACAAGTGAGGGAAAAGCAGGCATCAAAGTTGTAAGAGAGCGCAGAGTCAA
AAATTTTAATTTTAGAGGAATGATAATTTTAAAAGAATTGCAAGGTGAAA
AAAATAGATATATAACTGCAAACTCAAAAAAGCTAGCTTTAGAAGATTTA
CACCTTTTATATCTTTATAAATGTGCAAAATATGCAGGCCCTGATTTGTA
CAACCACACATTTAATTGCTGACTAGTCTTCTGGGCAGCAGGCAGCCAGA
AAATTCATGTACTTGCTCTATGGGCTGAGTTCATCCACCCATCAAGAAAC
ATGCTACCTGTGTAGAATCCATATTTGGTTGAATGTAAATATTACATACA
CATTAATACATATGAAATTTGTTTAGAAAACATGGTAAGACGATTTTTAA
ATGCTTAACAATGAGATCAATTCCTTTGCTGCGCACATCCATGTATCCAC
TCCTTACTTGCCATGAGAGGTATCCCTTCAGAGGACTACAGTGTCTGGCT
ATAAAGTGTTTCATGGTTCAGAGTANGTTATATATAAGAAAGATTCAATC
AAAACTGGCAGGGGAACAAAAAAGACTAATAGAATGGGAGGTAGAGAAAG
GAAGAAATGGAAGGTATTANGGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no524_j17.g1 MSMg01no524_j17.g1 CHROMAT_FILE:
MSMg01no524_j17.g1 PHD_FILE: MSMg01no524_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:56 2005
         (601 letters)



>mm_chr19_15358360_15359360
          Length = 1001

 Score = 1147 bits (593), Expect = 0.0
 Identities = 599/601 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtgtttcaggaaaattagacatgtggtttgacatcctaggcaaacacctaaaaatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttgtgtttcaggaaaattagacatgtggtttgacatcctaggcaaacacctaaaaatgt 742

                                                                       
Query: 61  ataggcagttcaaggaacaatcaacaagtgagggaaaagcaggcatcaaagttgtaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ataggcagttcaaggaacaatcaacaagtgagggaaaagcaggcatcaaagttgtaagag 682

                                                                       
Query: 121 agcgcagagtcaaaaattttaattttagaggaatgataattttaaaagaattgcaaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcgcagagtcaaaaattttaattttagaggaatgataattttaaaagaattgcaaggtg 622

                                                                       
Query: 181 aaaaaaatagatatataactgcaaactcaaaaaagctagctttagaagatttacaccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaaaatagatatataactgcaaactcaaaaaagctagctttagaagatttacaccttt 562

                                                                       
Query: 241 tatatctttataaatgtgcaaaatatgcaggccctgatttgtacaaccacacatttaatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatatctttataaatgtgcaaaatatgcaggccctgatttgtacaaccacacatttaatt 502

                                                                       
Query: 301 gctgactagtcttctgggcagcaggcagccagaaaattcatgtacttgctctatgggctg 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 gctgactagtcttctgggcagcaggcaaccagaaaattcatgtacttgctctatgggctg 442

                                                                       
Query: 361 agttcatccacccatcaagaaacatgctacctgtgtagaatccatatttggttgaatgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agttcatccacccatcaagaaacatgctacctgtgtagaatccatatttggttgaatgta 382

                                                                       
Query: 421 aatattacatacacattaatacatatgaaatttgtttagaaaacatggtaagacgatttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatattacatacacattaatacatatgaaatttgtttagaaaacatggtaagacgatttt 322

                                                                       
Query: 481 taaatgcttaacaatgagatcaattcctttgctgcgcacatccatgtatccactccttac 540
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 taaatgcttaacaatgagatcaattcctttgctgcgcacattcatgtatccactccttac 262

                                                                       
Query: 541 ttgccatgagaggtatcccttcagaggactacagtgtctggctataaagtgtttcatggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgccatgagaggtatcccttcagaggactacagtgtctggctataaagtgtttcatggt 202

            
Query: 601 t 601
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)