BAC Information

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BAC

Clone NameMSMg01-525K13
Chromosome19 (Build37)
Map Location 34,310,110 - 34,310,774
singlet/doubletsinglet
Overlap geneStambpl1
Upstream gene6530404N21Rik, LOC638381, EG668095, LOC628236, AI747699, EG668106, EG668112, EG668114, EG329055, EG433241, LOC668127, Lipf, Lipk, EG383462, Lipn, Ankrd22
Downstream geneActa2, Fas, Ch25h, Lipa, Ifit2, Ifit3, OTTMUSG00000016644, LOC667370, 2010002M12Rik, Ifit1, Slc16a12, LOC676714, Pank1, Mphosph1, LOC383464
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-525K13.T7 (MSMg01no525_k13.b1)MSMg01-525K13.TJ (MSMg01no525_k13.g1)
ACCAG595440AG595441
length759756
length of high quality
(start - end)		631 (36 - 666)661 (66 - 726)
definitionCHROMAT_FILE: MSMg01no525_k13.b1 PHD_FILE: MSMg01no525_k13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:21 2005CHROMAT_FILE: MSMg01no525_k13.g1 PHD_FILE: MSMg01no525_k13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:00:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTAA
GATTCCCATAAACCCTCATAACATGACTGGATCTGGCAACTCGGTAGGAG
TAAAAGGATCCCAAGAGCAAGCAAAAGTCAGAGACAGCCCCAACCCCCAT
TATTGGGAGTTCTACAAGAACACCTAGCTACACAACAATAAAGTATATGC
AAAGGAGCTAGGTCAGGTTTTGTGAGCCCCTATGAGCCTGATCTGTGGTA
GGTTCTGTTCTTACGGTGTCCTCAACTCCTCTGGCTCCTGCACTCCTTCC
TCCCTCCATCCTGCAGGGTTGCCATACATGTGCTCTCCCTTCTCTGCATC
TGCTCCCATCCGTCGTCGAATGATGTCCCTCTGATGACAATTGAGCAAGG
CATAGATCTGTGAGCATAGCAGAGTGTCACTAAGAGTCATTTCATTGTCT
TTTGGGGGTTTTGCCAGTTGTGTTTGGTTTGGTCCTAGTGATAAGAAGTG
ACAGCTCACATTGGTGAAGATGTAGAGCAAGCAGAGCACTCCCCCACTGC
TAGTGGGAGTACAAACTTGTGCAGCCATTGTGGAAATCAATATGGCAGTT
TCACAGAAAATTGGGAATTGGTCTACCTCAAGGCCCAGCTATGCTACTCT
TATGCACATCTTTGGGTACAAAGGATGATCCATTTGTTGCTCAGCTATGT
TCATAGTAGCTTTATTCATAATAGCCCGAAACTGAGAACAAGCTACCTAT
TCCTCAAGG

GGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATTGTGTGTCTAGAAAACAAGACAAAACAAAACAA
AAAGTAACAAGCCTCTGAGAGAAGAGACATCTGGACAGGATGTCATCAGC
CAGCAGACCTCACCCCTTGTACCTCACTACACTCTCTCACAATCCAAAAC
CAAGCAGAAAAACTGACTCTACTAAAAGGTTTTGGACATCCATTATTTGG
GTCTTGAATCCCATTGCTGCTATAGAAAGTAGAAAGGAATTAGTATCAGG
GTGAACAATGGGTAATTGATACATAGTTAACAAATGATTTCTTTGCGTAC
TTGACCTACAATGGAAAATGTCTTCACACAGCAAGACCAGCATTCTTTAG
AGAGACAGACTAATTTCCCAAATGCCTGATGCTACTAAAAGGTATGCCTA
TGAGTTGTCAGGGCTGATGTCTTGTTTTTATTAATTGTATGTAATTATAA
AAGAATTAGGACTTTTCCTCTAAGAGTCTCCAGTGTCTTCCAAAATGAAA
ACAGCTTTTAGAATCTAGTAAGAAGAAACATATTGCTCTCCTTGGGGAAA
AGGTAAGTATGGAAAAGAAGGGGTCTTGAAGTAAAGAGATTTAGGTCACT
GGGTTGTGAGTTGCTGTCCTCTTCCAGGCCTGGGGACCTCCCACCCTTCT
AAAATACCATCCTCTCTCCAGCCTCAAGGCCCTCTAATGTGTTGAGTACT
ATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no525_k13.g1 MSMg01no525_k13.g1 CHROMAT_FILE:
MSMg01no525_k13.g1 PHD_FILE: MSMg01no525_k13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:00:21 2005
         (661 letters)



>mm_chr19_34309873_34310942
          Length = 1070

 Score = 1199 bits (620), Expect = 0.0
 Identities = 652/670 (97%), Gaps = 14/670 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgtgtgtctagaaaacaagacaaaacaaaacaaaaagtaacaagcctctgagagaaga 60
           ||||||||||||||||     |||||||||||||||||||||||||||||||||||||||
Sbjct: 902 attgtgtgtctagaaa-----acaaaacaaaacaaaaagtaacaagcctctgagagaaga 848

                                                                       
Query: 61  gacatctggacaggatgtcatcagccagcagacctcaccccttgtacctcactacactct 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 847 gacatctggacaggatgtcatcagccagcagacctcaccccttgtatctcactacactct 788

                                                                       
Query: 121 ctcacaatccaaaaccaagcagaaaaactgactctactaaaaggttttggacatccatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ctcacaatccaaaaccaagcagaaaaactgactctactaaaaggttttggacatccatta 728

                                                                       
Query: 181 tttgggtcttgaatcccattgctgctatagaaagtagaaaggaattagtatcagggtgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tttgggtcttgaatcccattgctgctatagaaagtagaaaggaattagtatcagggtgaa 668

                                                                       
Query: 241 caatgggtaattgatacatagttaacaaatgatttctttgcgtacttgacctacaatgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 caatgggtaattgatacatagttaacaaatgatttctttgcgtacttgacctacaatgga 608

                                                                       
Query: 301 aaatgtcttcacacagcaagaccagcattctttagagagacagactaatttcccaaatgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aaatgtcttcacacagcaagaccagcattctttagagagacagactaatttcccaaatgc 548

                                                                       
Query: 361 ctgatgctactaaaaggtatgcctatgagttgtcagggctgatgtcttgtttttattaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ctgatgctactaaaaggtatgcctatgagttgtcagggctgatgtcttgtttttattaat 488

                                                                       
Query: 421 tgtatgtaattataaaagaattaggacttttcctctaagagtctccagtgtcttccaaaa 480
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgtatgtaattatgaaagaattaggacttttcctctaagagtctccagtgtcttccaaaa 428

                                                                       
Query: 481 tgaaa-----acagcttttagaatctagtaagaagaaacatattgctctccttggggaaa 535
           |||||     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tgaaaatgatacagcttttagaatctagtaagaagaaacatattgctctccttggggaaa 368

                                                                       
Query: 536 aggtaagtatggaaaagaaggggtcttgaagtaaagag----atttaggtcactgggttg 591
           ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||
Sbjct: 367 aggtaagtatggaaaagaaggggtcttgaagtaaagagatttatttaggtcactgggttg 308

                                                                       
Query: 592 tgagttgctgtcctcttccaggcctggggacctcccacccttctaaaataccatcctctc 651
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 307 tgagttgctgtcctcttccagacctggggacctcccacccttctaaaataccatcctgtc 248

                     
Query: 652 tccagcctca 661
           ||||||||||
Sbjct: 247 tccagcctca 238


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1070
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1060
Effective search space:   690060
Effective search space used:   690060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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