Query= MSMg01no526_j13.b1 MSMg01no526_j13.b1 CHROMAT_FILE:
MSMg01no526_j13.b1 PHD_FILE: MSMg01no526_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:34 2005
(616 letters)
>mm_chr19_53131019_53132035
Length = 1017
Score = 915 bits (473), Expect = 0.0
Identities = 559/601 (93%), Gaps = 24/601 (3%)
Strand = Plus / Minus
Query: 5 gaattcttgctaagtatatgcaagacccattgttcagttaatccctagcattgcaaaaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 gaattcttgctaagtatatgcaagacccattgttcagttaatccctagcattgc------ 536
Query: 65 aaaaaaaaaaaaaaaaggaaaaaaacaaaaaactcaaaatgggggag--------agaaa 116
||||| ||||||||||||| ||||| ||||||||||||| |||||
Sbjct: 535 -------aaaaagaaaggaaaaaaac--aaaacacaaaatgggggagagaaagaaagaaa 485
Query: 117 gaaaagagtcagtctatgg-ttttctcttgtattttcttctaaatgcatcttaaagtatt 175
||||||||||||||| ||| ||||||| |||||||||||||||| |||||||||||||||
Sbjct: 484 gaaaagagtcagtctgtggtttttctcctgtattttcttctaaaagcatcttaaagtatt 425
Query: 176 tttcccttgaaatataactacagaaaagggcacgggttatgagattttacccaattaata 235
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cttctcttgaaatataactacagaaaagggcacgggttatgagattttacccaattaata 365
Query: 236 tattcatacaacaagacttgttcaagaaggaatgccattagaagtcacgaaccctcatgg 295
||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 364 tattcctacaacaagactcattcaagaaagaatgccattagaagtcacgaaccctcatgg 305
Query: 296 attggtagggttagtatagtaaaaacagccaccccaccaagtctgcaatctgcagactca 355
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 304 attggtagggttagtatagtaaaaacggccacctcaccaagtctgcaatctgcagactca 245
Query: 356 atacagtcctcaccaaaattccaacacaattcttcacagaatccaaaagaacaattttta 415
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 244 atagagtcctcaccaaaattccaacacagttcttcacagaatccaaaagaacaattttta 185
Query: 416 gcttcatgtagcaacacaaaacagccaagacagctacaacattcctgatgatgaaagaac 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 gcttcatgtagcaacacaaaacagccaagacagctacaacattcctgatgatgaaagaac 125
Query: 476 ttctagagatatcactatccttgctactgagctatataggaataaaacgagcatggaatt 535
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 124 ttctagaggtatcactatccttgctactgagctatatagtaataaaacgagcatggaatt 65
Query: 536 ggcacaaaaacagacatgttgatcaatggaatcaaattgaggacccagacataaatccac 595
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 ggcacaaaaacagaaatgttgatcaatggaatcaaattgaggacccagacataaatccac 5
Query: 596 a 596
|
Sbjct: 4 a 4
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1017
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1007
Effective search space: 610242
Effective search space used: 610242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_j13.g1 MSMg01no526_j13.g1 CHROMAT_FILE:
MSMg01no526_j13.g1 PHD_FILE: MSMg01no526_j13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:34 2005
(669 letters)
>mm_chr19_52963245_52964313
Length = 1069
Score = 1151 bits (595), Expect = 0.0
Identities = 638/669 (95%), Gaps = 26/669 (3%)
Strand = Plus / Plus
Query: 1 cagttctaaaaatgcatacttacaattctctagatttccttggtatttgttattatgtcc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtcctaaaaatgcatacttacaattctctagatttccttggtatttgttattatgtcc 260
Query: 61 ttatttttaatctaaattgtttcttaaattgaatcttctctctctgccttttagcttttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatttttaatctaaattgtttcttaaattgaatcttctctctctgccttttagcttttg 320
Query: 121 tctaaccttttgtcaatcttattgattttcttaaagaactaactctttgtttcattgatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaaccttttgtcaatcttattgattttcttaaagaactaactctttgtttcattgatt 380
Query: 181 ctttgtattgtttgtttctttttatttcattgatttcagccctgagtttacttcttgaat 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttgtattgtttgtttctttttgtttcattgatttcagccctgagtttacttcttgaat 440
Query: 241 aaagtatgttgttccagaggccattgcatctcttgccagatggtaatgtaaaataaaata 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 aaagtatgttgttccagaggccattgcatctcttgccagatggtaatataaaataaaata 500
Query: 301 ggagtagttgtaataattcatgagataattgatattgcatgaagtatctaggtttcagcc 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggagtagttgtaataattcatgacataattgatattgcatgaagtatctaggtttcagcc 560
Query: 361 ctgcttcttcgacacctttctatgagagtagaggggtcgcttaaatctcctcctgaactc 420
||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 ctgcttcttcgacacctttctgtgagagtagaggggtcgct------------------- 601
Query: 421 atatgtaacaagagaagttagtttaaggaactaaaaacaagcaggcagtagttactctgg 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 -------acaagagaagttagtttaaggaactaaaaacaagcaggcagtagttactctgg 654
Query: 481 gtggaaatatatagtgcctgcaagaacacatcctgggcatctggtaatgctgcctcttgc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 gtggaaatatatagtgcctgcaagaacacatcctgggcatctggtaatgctgcctcttgc 714
Query: 541 tctgaccactgcaatgagagttcactcttgaacagcatcagtctacacatggcttcttgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tctgaccactgcaatgagagttcactcttgaacagcatcagtctacacatggcttcttgg 774
Query: 601 tccactgtatttgtggtctctctctcttttaaaactccagtttacattagaagcaagtga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tccactgtatttgtggtctctctctcttttaaaactccagtttacattagaagcaagtga 834
Query: 661 ctaaaaagg 669
|||||||||
Sbjct: 835 ctaaaaagg 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
