BAC Information

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BAC

Clone NameMSMg01-527A08
Chromosome19 (Build37)
Map Location 14,839,381 - 14,840,004
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502, Olfr1503-ps1, Olfr1504, Olfr1505, EG667433, Tle4
Downstream geneEG433225, EG635497, Pomc-ps1, LOC667482
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527A08.T7 (MSMg01no527_a08.b1)MSMg01-527A08.TJ (MSMg01no527_a08.g1)
ACCAG596472AG596473
length565746
length of high quality
(start - end)
---615 (83 - 697)
definitionCHROMAT_FILE: MSMg01no527_a08.b1 PHD_FILE: MSMg01no527_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:07 2005CHROMAT_FILE: MSMg01no527_a08.g1 PHD_FILE: MSMg01no527_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTTTTTTTTAGTTTTTTTTTTTTTTTTTGGATTATTTTTCTTTTTTT
TTTCTGNCGNCCCNNAGCNNCNTCTTTTTTTTTTTTTCTCTCTTTTCTCT
TTTTTAATCTTTCATCAACCATTTATTTTACTTTTTCATCTACTTTTTCT
CTTCTTTTAGTTTATTTCTTTTTTTTTTTTTNNGGAAAGANAAGAGAACT
CTAAAATTTGCCGCCCCCTTAATACGAAACTCACTTATTCCCGGAAAGAA
GGNATCCCGCCCGGGAAATTTCATTTATTTGCAACTTCANAATCTTCATA
AATTGGAAAAACAAATTCACACATTCTCAAACTCCTTTAATTACCACATT
CCCCAGACATCCCCTTTCATTTTCCATGTTGGAAAATCCCTTTCAAATAA
AATTTAAATTTTTTTATTCCCTCCCGGAAAAAACCCCCCCCCCCCCCTTT
TAAAACCCCCTTTTTTTCTTCANCAAAGCAAAAACCCTTTTTTTATAATT
TATAGCCCTCCCTTTTTTTTTTTTTTTTTTTTTTAAAAATTTTTTCCCCC
CCCACAAAAAAATTT
NNGGGGTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGGGGATTTTCTTTTCC
CCCAGATGAAAATGTTCACTAGCTTTGCCTATTCTGATTACTGGGAAATA
AGAAATCAGTCAGGAATAGGGACCATGAAGCCGTGCTCCATCTATGCTCT
TCACTCTGAGCCCCAATAACAATGGCGTTAACAGTAACATTGCTTGTTGT
CGCTTCTATTCAGGTTGTTTATCCAAAGGAAGCTTTAACACGAAGGCCGA
ATTAAATAACACTCCTATAAGTGGATAAGAACCCAACAGTACTATTGTAC
TTCAGAGGAAGAAGAGTGGGGGTCCTGGGAAAGAAAGACATTGTGTGGGA
GTCTGTGAGAAGAAAGGGTAAAATTAGAAATAGCCTTGGAGTAGGGGCCA
AGGAGGAGCTCGGAACAGCAGAGACAGGCATATTTACCCACCCCAGGCTA
CCTGGGTGTCTTCAGCTAGTCTGCTAGGGCAGACCACAGTCAAGTTCATT
TGCTAGTGAGGGAGAGATTGGAGAATCCAATTCACATGGAAATGTATGAA
GCAATGTCTGAAAAGAAAACAAGAAGGCCCCTAGTTGGAATGATGGAGAG
CCATTCAGGTGATATGAGGATTGGCTCTGGAGAGATTTCCCAGGATCAGA
AGGGATTAGGGGGTGCCAGGGCTGAACAGAATAGCCNAGAAACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_a08.g1 MSMg01no527_a08.g1 CHROMAT_FILE:
MSMg01no527_a08.g1 PHD_FILE: MSMg01no527_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:07 2005
         (615 letters)



>mm_chr19_14839030_14840044
          Length = 1015

 Score = 1137 bits (588), Expect = 0.0
 Identities = 611/624 (97%), Gaps = 9/624 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggggattttcttttcccccagatgaaaatgttcactagctttgcctattctgattact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 ttggggattttcttttcccccagatgaaaatgttcactagctttgcctattctgattact 916

                                                                       
Query: 61  gggaaataagaaatcagtcaggaatagggaccatgaagccgtgctccatctatgctcttc 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 aggaaataagaaatcagtcaggaatagggaccatgaagccgtgctccatctatgctcttc 856

                                                                       
Query: 121 actctgagccccaataacaatggcgttaaca---------gtaacattgcttgttgtcgc 171
           |||||||||||||||||||||||||||||||         ||||||||||||||||||||
Sbjct: 855 actctgagccccaataacaatggcgttaacagtatcttcggtaacattgcttgttgtcgc 796

                                                                       
Query: 172 ttctattcaggttgtttatccaaaggaagctttaacacgaaggccgaattaaataacact 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttctattcaggttgtttatccaaaggaagctttaacacgaaggccgaattaaataacact 736

                                                                       
Query: 232 cctataagtggataagaacccaacagtactattgtacttcagaggaagaagagtgggggt 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 cctataagtggataagaacccaacagtactattgtacttcagaggaagaagagtgggggt 676

                                                                       
Query: 292 cctgggaaagaaagacattgtgtgggagtctgtgagaagaaagggtaaaattagaaatag 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cctgggaaagaaagacattgtgtgggagtctgtgagaagaaagggtaaaattagaaatag 616

                                                                       
Query: 352 ccttggagtaggggccaaggaggagctcggaacagcagagacaggcatatttacccaccc 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ccttggagtaggggccaaggaggagctcggaacagcagagacaggcatatttacccaccc 556

                                                                       
Query: 412 caggctacctgggtgtcttcagctagtctgctagggcagaccacagtcaagttcatttgc 471
           ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 555 caggctacctgggtgtcttcagctaatctgctggggcagaccacagtcaagttcatttgc 496

                                                                       
Query: 472 tagtgagggagagattggagaatccaattcacatggaaatgtatgaagcaatgtctgaaa 531
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 495 tagtgagggagagattggagaatccaattcacatggaaatgtatgaagcaatgtgtgaaa 436

                                                                       
Query: 532 agaaaacaagaaggcccctagttggaatgatggagagccattcaggtgatatgaggattg 591
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 agaaaacaagaaggcccctagttggaatgatggagagccattcaggtgatatgaggattg 376

                                   
Query: 592 gctctggagagatttcccaggatc 615
           ||||||||||||||||||||||||
Sbjct: 375 gctctggagagatttcccaggatc 352


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)