BAC Information

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BAC

Clone NameMSMg01-527I08
Chromosome19 (Build37)
Map Location 8,337,425 - 8,338,075
singlet/doubletsinglet
Overlap geneEG633120
Upstream geneRcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik
Downstream geneEG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699, LOC100040104
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-527I08.T7 (MSMg01no527_i08.b1)MSMg01-527I08.TJ (MSMg01no527_i08.g1)
ACCAG596854AG596855
length793742
length of high quality
(start - end)		---651 (83 - 733)
definitionCHROMAT_FILE: MSMg01no527_i08.b1 PHD_FILE: MSMg01no527_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:47 2005CHROMAT_FILE: MSMg01no527_i08.g1 PHD_FILE: MSMg01no527_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:02:47 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CGGTGGTTCTGTAGTTTGXXXXXXXXXXXXXXXXXXXXXXXXCTGGANGA
GAGGATCCTGCGGGAGTTTCCTGGGNNNAAAANNNTTTTNNNTNNNNNNN
NNNNTTNTTTTTTTTTTTTTTTTTTTTTTTNNTNTTTTTTTTTTTTNNNN
TTTTTTTTTTTTCTTTCTCTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTT
TTTNTTTTTTTTTTTTGGGGNTCNNNNCNNNNNNNNNNNNNNNNTTTTTA
TTCTTGGAATGGGGTTGGNTNNNTGGGNNNNNNNAATTTTTTTTTTTGGC
TTCAAAAAAATGGGCTTTTTTTTTCCCCCTTTTCCAGGGCCCAATTTTTC
CCTTTCTTNCCCTAAGGGGNATTGGCATTTCCCTTTTGGGGGTGGGGGCT
TTGTTTTTTTTGGTTCCTTTTTTGGGGGGGGNTTTTGGGGTTTTTTTAAT
TTAAATTTGGGGTTGGGGGGATTTTTTTTGGGCCTTGGGGGTGGGGGAAT
TTTTTCCCTGGGGGTTGTGGGGGGGAGAATTTTTTTTTCCCCCGGGGGCC
TTTCTCCCTTGGGGGAGTTGGGGGGGCCCCTTCCCCTTTTTGGGGCCCCG
GGGGGGGGGGGGGTGGGTCCCCGTGTTTTTTTGGGGGGGGGGGGTTCTCT
GGGGGGGCTTTCTCCGGGTTTTGGGGGGGGGGGGGGTTTTTTTTTTTTTG
GGGGGGGGGTTTTTTTTTTTGTGGGCGGCCCGGGGTTTTTTTTTTCCTTT
TGGGGGGGGGGGGAATTTTTTGGGGGCTCTCTGGCGGGGGTTC

NNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGAAAGGCCATCGAAGC
TGAATAACTATCTACAAAGAGGGACAAATAATACTTTCCTATAGAAAAGT
ATTAGTACAAAGCATTTAAAAATTATATTTAACAAAGACACCCTAAATAG
TGTTGATCCTGAGCTGTTCTTCATGTGTCCCTACTAACTTCTGCATTGCT
GTCATAGAAAAATTATCCTTTAGTGAGCTAACAAAAGTTTAAAATGTCCG
TGCCATTAGTAATGAACTTCTCTCTCTTTAGCTTCTTCTAAAGTCAACAA
GCTTCCTATCATTGTTTCTATTTCAGCAATTGAACTTGTTAAAGATTTAT
TTTAAAAGGTATTTTGTTTACACAATGCTCCGTGGTCAAATATGGACATT
GATCTGCAAATCTCAGGAATCAAAAAAGTTAAACTATAACATGTTATGCC
TTGCAGAACATGCAATTTAAAAGGCTCCAAGGTGACCCATTTTATTTTTT
ATTCAATGTATTGTGTTTAATATTAAAGCTTGCTAAAAGAGTAAAGGAAT
AGAATTAAAGTTAAATTAGTTAATGCAAAACACCATACAAAAGCTGTTTC
AAATAAGAATGTTCCTCCCAGACACATTTGTTTGAATGCTTGGTTCTCAG
TGTATGGAAATTGTTGATGAAATTAAGAGGAGTGGCCTTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no527_i08.g1 MSMg01no527_i08.g1 CHROMAT_FILE:
MSMg01no527_i08.g1 PHD_FILE: MSMg01no527_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:02:47 2005
         (651 letters)



>mm_chr19_8337225_8338275
          Length = 1051

 Score = 1236 bits (639), Expect = 0.0
 Identities = 648/651 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaaaggccatcgaagctgaataactatctacaaagagggacaaataatactttcctat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaaaggccatcgaagctgaataactatctacaaagagggacaaataatactttcctat 260

                                                                       
Query: 61  agaaaagtattagtacaaagcatttaaaaattatatttaacaaagacaccctaaatagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaagtattagtacaaagcatttaaaaattatatttaacaaagacaccctaaatagtg 320

                                                                       
Query: 121 ttgatcctgagctgttcttcatgtgtccctactaacttctgcattgctgtcatagaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgatcctgagctgttcttcatgtgtccctactaacttctgcattgctgtcatagaaaaa 380

                                                                       
Query: 181 ttatcctttagtgagctaacaaaagtttaaaatgtccgtgccattagtaatgaacttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatcctttagtgagctaacaaaagtttaaaatgtccgtgccattagtaatgaacttctc 440

                                                                       
Query: 241 tctctttagcttcttctaaagtcaacaagcttcctatcattgtttctatttcagcaattg 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 tctctttagcttcttctaaagtcaacaagcttcctaccattgtttctatttcagcaattg 500

                                                                       
Query: 301 aacttgttaaagatttattttaaaaggtattttgtttacacaatgctccgtggtcaaata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacttgttaaagatttattttaaaaggtattttgtttacacaatgctccgtggtcaaata 560

                                                                       
Query: 361 tggacattgatctgcaaatctcaggaatcaaaaaagttaaactataacatgttatgcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggacattgatctgcaaatctcaggaatcaaaaaagttaaactataacatgttatgcctt 620

                                                                       
Query: 421 gcagaacatgcaatttaaaaggctccaaggtgacccattttattttttattcaatgtatt 480
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acagaacatgcaatttaaaaggctccaaggtgacccattttattttttattcaatgtatt 680

                                                                       
Query: 481 gtgtttaatattaaagcttgctaaaagagtaaaggaatagaattaaagttaaattagtta 540
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 681 gtgtttaatattaaagcttgctaaaagagttaaggaatagaattaaagttaaattagtta 740

                                                                       
Query: 541 atgcaaaacaccatacaaaagctgtttcaaataagaatgttcctcccagacacatttgtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atgcaaaacaccatacaaaagctgtttcaaataagaatgttcctcccagacacatttgtt 800

                                                              
Query: 601 tgaatgcttggttctcagtgtatggaaattgttgatgaaattaagaggagt 651
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgaatgcttggttctcagtgtatggaaattgttgatgaaattaagaggagt 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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