NNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCACTGCTATCAGGACAATAGACACCATAGCCTGAAGGCCAGA
TAAGAGTTCCACTGCATGAACAACAACAGACCACATAGACTGAAGGTCTC
CCAAGAGAACAGGGCACAACAGCTGAACTGCTCTTTTGAGGACCCATCAG
TCTGAAGGCATCCTAGGACATCTGCAGCCGCCAGGAAAACAAATCAGCAG
CTTTAATGCCTCTTGAAGACACCACATTCTGAAGACCTCCCTGAAGAGCC
ACTGTATCCAGGGCAACAGGTCAATGGCATACATTCCCCCTCTGAAGTCC
CCACAGTCCAAAAGCCTCACATGAGGTCTGCTGCAGCCAGAGCCATAAGT
CTGCCAGGAGACCTGCAGCAACCAAAGGACACAGGAGGCAGCCTCCAGAC
AGAGATATCCAGACCAGCTAACACCAGGAATAACAAGATGGTGAGAGTTA
AGCACGAGACCATAAGCAGCAGAAGCCAATATCCTTTAGAACAATCTAAA
CCCACTTCTCCTACCATGGCAAATCCTGGATACACCAAAACACCTGATTA
TCAGGAAGCTGACCTAAAATCCTATATCATGAAGATAATATAGTCCTTTA
AGGATGATGTAAATAACTCACAATACATGAAAACGTGTAACCAGGTAGAA
GCACTTAAAGAGGAAACAAATAAATCCCTTAAAGAAAAAGAGAGAAACCA
N

NCCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTAGATGAACTGCATTTCCTAA
CATTTTATCTTCTGGTAGGAGAGAAACTCTGCACTCACAAACTCACATAC
TCTGGGTTCATCTCCACAAGACCAGCAAGAACAAACCAGTCAGCTTTTCT
GTCTCGATGGGGGAAGGAAAAAGGTTCATGAACTCTAGAATTGTAGTGAG
GTACAGGTGTGGGGTTTTAAAAGTAGAATTAGATGGCTCAGTGTTTAAGA
GACCTTCCCTGCAACTACATGGTGGCTCACAACCATCTGTAATGGGATCT
GATGCTCCCTTCTGATGTGTCTGAAGCTGCAATGTACTCATATACATTAA
ATAAATAAATAAATAAATAAACAAATAAATAAATAATAAATCTTAAAAAG
AATAATTAGTTTTCCTAGAGTGGAATGTTTGGCATGTCTACTATGTTCCA
CTAGAGGGCCTCATAGAATAAGTGACAATCAAAAATGCGACTTAATGTGT
TGTTAAATAAAATTGTAAAATGTCAAGAAGTTAGGCAGAGATTGATGGAG
GTTAATAAGGAATGAATAAAGGCATATATGAATTTGAGATGATCAAAACA
TTTTGTGTCACCCTGAAAGAATTACTAGAATATACTAAAATAAAAGATAT
TATGGATGGATAATTTATATTACAAAATGACTAAATTGTTAAAACAATN

Query= MSMg01no528_j16.g1 MSMg01no528_j16.g1 CHROMAT_FILE:
MSMg01no528_j16.g1 PHD_FILE: MSMg01no528_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:15 2005
         (660 letters)



>mm_chr19_40003927_40004986
          Length = 1060

 Score =  870 bits (450), Expect = 0.0
 Identities = 481/496 (96%), Gaps = 9/496 (1%)
 Strand = Plus / Minus

                                                                        
Query: 174  gtacaggtgtggggttttaaaagtagaattagatggctcagtgtttaagagaccttccct 233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1060 gtacaggtgtggggttttaaaagtagaattagatggctcagtgtttaagagaccttccct 1001

                                                                        
Query: 234  gcaactacatggtggctcacaaccatctgtaatgggatctgatgctcccttctgatgtgt 293
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 gcaactacatggtggcttacaaccatctgtaatgggatctgatgctcccttctgatgtgt 941

                                                                        
Query: 294  ctgaagctgcaatgtactcatatacattaaat--------aaataaataaataaataaac 345
            |||||||| |||||||||||||||||||||||        ||||||||||||||||||| 
Sbjct: 940  ctgaagctacaatgtactcatatacattaaataaataaacaaataaataaataaataaat 881

                                                                        
Query: 346  aaataaataaat-aataaatcttaaaaagaataattagttttcctagagtggaatgtttg 404
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 880  aaataaataaataaataaatcttaaaaagaataattagttttcctagagtggaatgcttg 821

                                                                        
Query: 405  gcatgtctactatgttccactagagggcctcatagaataagtgacaatcaaaaatgcgac 464
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  gcatgcctactatgttccactagagggcctcatagaataagtgacaatcaaaaatgcgac 761

                                                                        
Query: 465  ttaatgtgttgttaaataaaattgtaaaatgtcaagaagttaggcagagattgatggagg 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  ttaatgtgttgttaaataaaattgtaaaatgtcaagaagttaggcagagattgatggagg 701

                                                                        
Query: 525  ttaataaggaatgaataaaggcatatatgaatttgagatgatcaaaacattttgtgtcac 584
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700  ttaataaggaatgaataaaggcatatatgaatttgagatgatcaaaacattttgtgtcac 641

                                                                        
Query: 585  cctgaaagaattactagaatatactaaaataaaagatattatggatggataatttatatt 644
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 640  cctgaaagaattactagaatatactaaaataaaagaaattatggatggataatttatatt 581

                            
Query: 645  acaaaatgactaaatt 660
            ||||||||||||||||
Sbjct: 580  acaaaatgactaaatt 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)