BAC Information

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BAC

Clone NameMSMg01-528M22
Chromosome19 (Build37)
Map Location 12,665,311 - 12,665,970
singlet/doubletsinglet
Overlap genenone
Upstream geneMs4a6d, Ms4a2, Ms4a3, Plac1l, Oosp1, Gm97, Gif, EG666958, Mrpl16, Stx3, Olfr1417, Olfr1418, Olfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik
Downstream geneEG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444, Olfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528M22.T7 (MSMg01no528_m22.b1)MSMg01-528M22.TJ (MSMg01no528_m22.g1)
ACCAG597836AG597837
length756754
length of high quality
(start - end)
663 (51 - 713)584 (80 - 663)
definitionCHROMAT_FILE: MSMg01no528_m22.b1 PHD_FILE: MSMg01no528_m22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:31 2005CHROMAT_FILE: MSMg01no528_m22.g1 PHD_FILE: MSMg01no528_m22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTCCCAACATGGGTATACAATTTTGCATGGCCCCCAGAGC
CCCCCTGGAATAGAAACCTCTCAGAGGTATGTTTTATCTCCCTCCCCCAA
AAGCAGCTGAGGAGGAGGTAGACAAAGAGTGGGTTCAGAGTTAGAAAAAA
GAATCACCTACACGATTCTATCTTTGGTGTTGGATAACTGGTTTGTATTA
AACTGAATGGATTTCTAATGATTTGGTTAACGCAAAGCTATGTACCACAG
AAGTCCTTTATTGCTGACATGATTAATATCCACACTAGTAAGTCATGTAT
CTGGTAGCTATAGCTACATCCCTTTTCTGCAGGGCCATGGGACTTGCTTA
CCCAATGTAACAGCCCATCCTTTTTTCTCCTTTGCTGAGAATAACTTGAG
TAATACTGAAGAGCCATTGGGATCGCTAGCTCATAGTCAGATGTATTAAC
ATGTGTGTCAGTGGGGACTTTTAATCCTCTTCCTTTGCCCACTGCATGTG
TTTCTTGGTTGACAGAATTTGATTCCACAAATCAGGGAATCCTCTCAGGT
TCTGGAATGTACAGAGCAGAATATGTAATAGAAAAGATAGTTATTGATTA
CATGTTGACAAGCTAGAGAGTTGGTTCCAGGGTTATGAGCATTTCTTCCA
GAGGATCTGGAGTTCAATTCCCAGACCAGCCATGGCAGCTCACAACCCTC
CAATTA
TTTTTTCAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCCACTAAGTAAGCCTTC
AGTCAAGTTTCGGTGGCTGTTGAGTACCTCCATGATATAAGAGCTACTAT
CAGACCTTTCAGAATATCTTGCAGTGATGATCATTGTGGCTTGCAGATGT
TATACCTACATAAGATGACTGATTGCTCCCTTAGCCACTTGCATAGCTCT
ATCTGATACTGTAAGAGCTATTTTTCAGGGTTGAGGCTTTCAGGTCAGAT
CCATATAGATTCCTCTAAGTTATGGGTTCAATGTGTGTGGAATCTTTAGC
AATAGTATCTTATATTATTTTTCTAGAAGACAACTGAAGGCAATGCTAAT
AACTGATATAATTTGGGGTGTCTTTTAGATAGATGTTTGGGGTGTTTTTA
AATAGATGAATACTTAAAGGACCCAAGAGTATAATTAGCAAGGAACTTTT
AAAAAATTAAACATTTATTTTTTTAAATTTTTATGTATGTGAGGCTTTTG
CCTATGTGTATATATGTACCATAGCCATGAGTGGGGATCAGAAGAAGGCA
TTAGATGCCCTGAAACTGGACTTCCAGCCAGTTATGAGTAGTTATGTGGG
TGCTGGGATTAGAAGCTGGGTCCTCTGGGAGAGCAGCTCATACTCTTGTT
TCTGTCCCCCACCTCTTCTCTGTGTAGCCGTGGCTGTCCTGGAACTCTTC
ACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_m22.b1 MSMg01no528_m22.b1 CHROMAT_FILE:
MSMg01no528_m22.b1 PHD_FILE: MSMg01no528_m22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:31 2005
         (663 letters)



>mm_chr19_12665107_12666170
          Length = 1064

 Score = 1253 bits (648), Expect = 0.0
 Identities = 657/660 (99%), Gaps = 1/660 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcccaacatgggtatacaattttgcatggcccccagagcccccctggaataga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gaattcctcccaacatgggtatacaattttgcatggcccccagagcccccctggaataga 805

                                                                       
Query: 65  aacctctcagaggtatgttttatctccctcccccaaaagcagctgaggaggaggtagaca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 aacctctcagaggtatgttttatctccctcccccaaaagcagctgaggaggaggtagaca 745

                                                                       
Query: 125 aagagtgggttcagagttagaaaaaag-aatcacctacacgattctatctttggtgttgg 183
           ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 744 aagagtgggttcagagttagaaaaaagaaatcacctacatgattctatctttggtgttgg 685

                                                                       
Query: 184 ataactggtttgtattaaactgaatggatttctaatgatttggttaacgcaaagctatgt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ataactggtttgtattaaactgaatggatttctaatgatttggttaacgcaaagctatgt 625

                                                                       
Query: 244 accacagaagtcctttattgctgacatgattaatatccacactagtaagtcatgtatctg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 accacagaagtcctttattgctgacatgattaatatccacactagtaagtcatgtatctg 565

                                                                       
Query: 304 gtagctatagctacatcccttttctgcagggccatgggacttgcttacccaatgtaacag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtagctatagctacatcccttttctgcagggccatgggacttgcttacccaatgtaacag 505

                                                                       
Query: 364 cccatccttttttctcctttgctgagaataacttgagtaatactgaagagccattgggat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cccatccttttttctcctttgctgagaataacttgagtaatactgaagagccattgggat 445

                                                                       
Query: 424 cgctagctcatagtcagatgtattaacatgtgtgtcagtggggacttttaatcctcttcc 483
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cgctagctcatagtcagacgtattaacatgtgtgtcagtggggacttttaatcctcttcc 385

                                                                       
Query: 484 tttgcccactgcatgtgtttcttggttgacagaatttgattccacaaatcagggaatcct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tttgcccactgcatgtgtttcttggttgacagaatttgattccacaaatcagggaatcct 325

                                                                       
Query: 544 ctcaggttctggaatgtacagagcagaatatgtaatagaaaagatagttattgattacat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctcaggttctggaatgtacagagcagaatatgtaatagaaaagatagttattgattacat 265

                                                                       
Query: 604 gttgacaagctagagagttggttccagggttatgagcatttcttccagaggatctggagt 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gttgacaagctagagagttggttccagggttatgagcatttcttccagaggatctggagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1064
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1054
Effective search space:   688262
Effective search space used:   688262
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)