BAC Information

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BAC

Clone NameMSMg01-528P04
Chromosome19 (Build37)
Map Location 40,334,075 - 40,334,591
singlet/doubletsinglet
Overlap genePdlim1
Upstream geneCyp2c29, Cyp2c38, Cyp2c39, C730004C24Rik, 9030012A22Rik, Cyp2c40, LOC100043108, LOC100042523, Cyp2c37, Cyp2c54, Cyp2c50, Cyp2c70, LOC545289, LOC676923
Downstream geneLOC435599, Sorbs1, A930028N01Rik, Aldh18a1, LOC100043135, 4930521E07Rik, EG667723, Entpd1, EG667720, EG668310, EG668311, Ccnj, LOC664819, E030044B06Rik, E130314M14Rik, Zfp518, Blnk, LOC100043155, Dntt, Tmem10, Tll2, Tm9sf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528P04.T7 (MSMg01no528_p04.b1)MSMg01-528P04.TJ (MSMg01no528_p04.g1)
ACCAG597943AG597944
length751752
length of high quality
(start - end)
701 (51 - 751)539 (77 - 615)
definitionCHROMAT_FILE: MSMg01no528_p04.b1 PHD_FILE: MSMg01no528_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:42 2005CHROMAT_FILE: MSMg01no528_p04.g1 PHD_FILE: MSMg01no528_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAATTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTAAGAGTGGCTTGCCAAATTTCTAGAAGCAAATACAGTA
CTTAAACATAGATTTTTGTGGAAGTTAATGGGGAAATCAAAGGATAGGGT
GTTAGCAGGCCAAAGCTATCCTGGCATTGCCCCTTCTGGTTTTCCATTTG
TATAGCAAGAGGTTTGGAACTTGCTTCCAAATATTCTTTCCATAATACGC
TAGTCAGAACTGTCATGTCTGGTCACCTCACTACTCGATCTTTGTTCAAT
CTGACCCATGAGTAAGAAAGAGCAAAAGAATGTTCTCAGAGTCAAGGAAT
TATGACTTCACCTGCAACCAGGGGGTGCTCAGAATCTTGGATATTTCATT
CAGTTTTTCCAACAAGTTTAGAAAATCCCGATCTTTATAATCAAAACGAT
CCTGGAAAATAATTGAGCAGATGACATTGCAGGGAGCACAGCCCAGGATG
AAGGTGGGATCACACCGTAAGCCTGAAAATTTGAAAACAATTGTAAAATA
TTATTAAAATACACATATAAGGCACCTTGCCCTTGCTATCATGTTAAGAT
ACTTTATAAATTCTATGCTACATTTATGCTAAGGGCAATGCATGGCTTGA
CAATCCTTTGGAACACTGACATGAGACCTATACACCTCATTAGGAAAAAA
AATTACTTTCAATAAGATAGGAACAAAATCACTCATACAGTCATACCTAG
A
NCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGTGGATCCCAGAATGGCCTTC
AGCGTGGATTTGGTGTCAAGAGTGTAGGTGTGCACCATCACCTCAGGCTG
GTTGGAACACTTGAGGACAGAATGGGTGCTTCCCATAGTTAAGAGGAAAT
AGTTTACTGACCTGGGCACACAAAGGTGTTTAGCTGTGAAATAGTTCTTT
TTTTTTTTTTTTTTTTTTTTTGGGGCTGGGGATTGAACCCAGGGCTTTAT
CACCATGGAGTTCCTTCTCAGCCTATCATAAAGTGCTTTTACATGTAATC
GCTTTGCATTGCTTTTGAACTGAGCCTTCAGTCCCAAACTCATTGGTATG
TGGGACCCAGGAGGCAACACTGATGGGGCTGACTAGAGGGTGAAGTAGTG
AGATGAATCACTGACTGGGTGATGACAACTGGCAGCTGATACTGGGGGTC
TGTACTAAAGGCAGGAGAGCATGATGGGTTTTGTGGCTAAGTGGGTGATA
TGTTTCTCATTTAGTGGGTTGGAATCTCCTTTGTTGGTACTGATTGTTGC
CATATGGAAATCTAAGCTCAGAAATGCCAGATTTTTCATAAGCTTAGAGT
CTATGGGTTTGGATGAAATTTATCATACCTGATCTAAATTAAAACAAATA
TAAGGCAACTTTGATTGTGAATCAGATTCATCCGACGAGCTCAGCTCTCA
GT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_p04.g1 MSMg01no528_p04.g1 CHROMAT_FILE:
MSMg01no528_p04.g1 PHD_FILE: MSMg01no528_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:42 2005
         (539 letters)



>mm_chr19_40333653_40334591
          Length = 939

 Score =  853 bits (441), Expect = 0.0
 Identities = 489/517 (94%), Gaps = 20/517 (3%)
 Strand = Plus / Minus

                                                                       
Query: 43  agagtgtaggtgtgcaccatcacctcaggctggttggaacacttgaggacagaatgggtg 102
           |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 939 agagtgtaggtgtgcaccatcaccccaggctggttgggacacttgaggacagaatgggtg 880

                                                                       
Query: 103 cttcccatagttaagaggaaatagtttactgacctgggcacacaaaggtgtt-------- 154
           |||||||||||||||||||||| | |||||||||||||||||||||||||||        
Sbjct: 879 cttcccatagttaagaggaaatcggttactgacctgggcacacaaaggtgtttggtaatt 820

                                                                       
Query: 155 ---------tagctgtgaaatagttc---ttttttttttttttttttttttttggggctg 202
                    |||||||||||||||||   |||||||||||||||||||||||||| ||||
Sbjct: 819 ctagctgtgtagctgtgaaatagttctttttttttttttttttttttttttttggtgctg 760

                                                                       
Query: 203 gggattgaacccagggctttatcaccatggagttccttctcagcctatcataaagtgctt 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gggattgaacccagggctttatcaccatggagttccttctcagcctatcataaagtgctt 700

                                                                       
Query: 263 ttacatgtaatcgctttgcattgcttttgaactgagccttcagtcccaaactcattggta 322
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttacatataatcgctttgcattgcttttgaactgagccttcagtcccaaactcattggta 640

                                                                       
Query: 323 tgtgggacccaggaggcaacactgatggggctgactagagggtgaagtagtgagatgaat 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tgtgggacccaggaggcaacactgatggggctgactagagggtgaagtagtgagatgaat 580

                                                                       
Query: 383 cactgactgggtgatgacaactggcagctgatactgggggtctgtactaaaggcaggaga 442
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 579 cactgactgggtgatgacaactggcagctgatactgggggtctgtactagaggcaggaga 520

                                                                       
Query: 443 gcatgatgggttttgtggctaagtgggtgatatgtttctcatttagtgggttggaatctc 502
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 519 gcatgatgggttttgtggctaagttggtgatatgtttctcatttagtgggttggaatctc 460

                                                
Query: 503 ctttgttggtactgattgttgccatatggaaatctaa 539
           |||||||||||||||||||||||||||||||||||||
Sbjct: 459 ctttgttggtactgattgttgccatatggaaatctaa 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)