BAC Information

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BAC

Clone NameMSMg01-528P19
Chromosome19 (Build37)
Map Location 8,307,351 - 8,308,045
singlet/doubletsinglet
Overlap genenone
Upstream geneNat11, Rcor2, Mark2, AI846148, EG665419, 2700081O15Rik, Rtn3, LOC100039547, 5730596K20Rik, Hrasls3, Lgals12, Hrasls5, LOC433217, Slc22a19, LOC666543, BC014805, LOC632903, AB056442, LOC620946, LOC623030, 9530053H05Rik, EG434674, LOC100039705, D630002G06Rik
Downstream geneEG633120, EG666601, LOC100039749, C730048C13Rik, LOC100040004, LOC666612, EG623402, Slc22a8, Slc22a6, Chrm1, Slc3a2, Snord22, Wdr74, 1700092M07Rik, Stx5a, LOC100039902, Nxf1, 0610006I08Rik, 1810059G22Rik, Taf6l, LOC100039957, Polr2g, Zbtb3, Ttc9c, Hnrpul2, Gng3, Bscl2, 1110067I12Rik, D19Ertd721e, AI462493, 1810009A15Rik, Ints5, Ganab, B3gat3, Rom1, Eml3, Mta2, Tut1, Eef1g, Ahnak, Scgb1a1, Asrgl1, EG621699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-528P19.T7 (MSMg01no528_p19.b1)MSMg01-528P19.TJ (MSMg01no528_p19.g1)
ACCAG597973AG597974
length764762
length of high quality
(start - end)		705 (47 - 751)657 (77 - 733)
definitionCHROMAT_FILE: MSMg01no528_p19.b1 PHD_FILE: MSMg01no528_p19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:46 2005CHROMAT_FILE: MSMg01no528_p19.g1 PHD_FILE: MSMg01no528_p19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:04:46 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCAAAAGTTTTAGACTTTATTTATATGACATTTTCTCTATATG
ACTGGTAAGATGGCTCAGCAGGTAAGGACACATGCTACCAAGTCAGAGGA
GGAGGATTCAATTCCAAGGACCAAAGTAGTGGCCCTAGAGGATTGACCCT
AAAGAGTTGTTAACCTTAACAACTTCATGTGCATGTGCAGGAATAAATGT
GTATGTATGCATGTACATACACACAATAAATAAAAAATAGATTCAACAAA
AAAATGAAGGCAAGCATAAATGTTCCTTAATATTAGTAGGTCAATAACAG
CATTCTTATGGCATATTTATCAAATTTCATCTATAAATTATTTGCATTTT
AGATATAGTTCTCTGTATAAAACAATTGTATAATTACAGTTCATGTAATG
AATAAAGTACCAAGATTTTTATGAGTAAGAAGAGTAAGACAAAAAGGTAT
GCCCTTCTTTTTTTGTTTTTTGTTTTTTATTTTCTTTTATTGGATATTTT
CTTTTATTTACAATTCAAATGCTATCCCCAATCCTGGTTTCCCCTCCAGA
AACCCCTATCCCTTCCCCACTTCCCCGGCCTCTATGAATGTGCTCTCCCA
CTGAACGACCCACTCCCACCATCCCTCCCTAGCATTCTCCTACACTGGGG
CATTGAACCTACACAGGACCAAGAGTCTCTCCTCCCATTGATTCCCAATA
AGGCCATCCTCTGN

NNAACAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCTTGCAGCTGTCTTCTTTTA
AGTTTGTTGAAGGTTTACTTTCTTGCTTTTTCTAGTTTCTAGTTTCTGTC
CTTGTGTTTGTGTTTTCCCTTTACTATCCTTTGAAGGTCTGGATTCATGG
AAAGATATTGTGTGAATTTGGTTTTATCATGGAATACTTTGGTTTCTCCA
TATATGGTAATTGAGAGTTTTGCTGGGTATAGTAGCCTGGGCTGGCATTT
GTTTTTTCTTAGGGTCTGCATAACTTCTGTCCAGCATCTTCTGGCTTTCA
TAGTCTCTGGTGAGAAGTCTGGTGTAATTCTAATAGCCATGTCTTTATAT
GTTACTTGACCTTTTCCCCTTACTGCTTTTTAATATTCCATCTTTATTTA
GTGCATTTGTTGTTCTGTTTCTTATGTGTCAGGAGGAATTTCTTTTCTGG
TCCAGTCAATTTGGAGTTCTGTAGACTTCTTGTATGTTCATGGGCATCTC
TTTCTTTAGGTTTGGGGAGTTTTCTTCTATAATTTTGTTGAAAATACTTG
CTGGCCCTTTAATTTGGAAATCTTCATTCTCATCTATACCTATTATCTGT
AGGTTTGTTCTTCTCCTTGTGTCTTGGATTTCCTGGATGTTTTGAGTTAG
GATCTTTTTGCATTTTGTATTTTCTTTGATTGGTGTGGCCATGTACTCTA
TCGAATCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no528_p19.b1 MSMg01no528_p19.b1 CHROMAT_FILE:
MSMg01no528_p19.b1 PHD_FILE: MSMg01no528_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:04:46 2005
         (705 letters)



>mm_chr19_8307141_8308245
          Length = 1105

 Score = 1282 bits (663), Expect = 0.0
 Identities = 689/701 (98%), Gaps = 6/701 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccaaaagttttagactttatttatatgacattttctctatatgactggtaaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattcaccaaaagttttagactttatttatatgacattttctctatatgactggtaaga 270

                                                                       
Query: 65  tggctcagcaggtaaggacacatgctaccaagtcagaggaggaggattcaattccaagga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tggctcagcaggtaaggacacatgctaccaagtcagaggaggaggattcaattccaagga 330

                                                                       
Query: 125 ccaaagtagtggccctagaggattgaccctaaagagttgttaaccttaacaacttcatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||      ||||||||||
Sbjct: 331 ccaaagtagtggccctagaggattgaccctaaagagttgttaac------aacttcatgt 384

                                                                       
Query: 185 gcatgtgcaggaataaatgtgtatgtatgcatgtacatacacacaataaataaaaaatag 244
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcatgtgcaggaatgaatgtgtatgtatgcatgtacatacacacaataaataaaaaatag 444

                                                                       
Query: 245 attcaacaaaaaaatgaaggcaagcataaatgttccttaatattagtaggtcaataacag 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 attcaacaaaaaaatgaaggcaaacataaatgttccttaatattagtaggtcaataacag 504

                                                                       
Query: 305 cattcttatggcatatttatcaaatttcatctataaattatttgcattttagatatagtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cattcttatggcatatttatcaaatttcatctataaattatttgcattttagatatagtt 564

                                                                       
Query: 365 ctctgtataaaacaattgtataattacagttcatgtaatgaataaagtaccaagattttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctctgtataaaacaattgtataattacagttcatgtaatgaataaagtaccaagattttt 624

                                                                       
Query: 425 atgagtaagaagagtaagacaaaaaggtatgcccttctttttttgttttttgttttttat 484
           ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 625 atgagtaagaatagtaagacaaaaaggtgtgcccttctttttttgttttttgttttttat 684

                                                                       
Query: 485 tttcttttattggatattttcttttatttacaattcaaatgctatccccaatcctggttt 544
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tttctttcattggatattttcttttatttacaattcaaatgctatccccaatcctggttt 744

                                                                       
Query: 545 cccctccagaaacccctatcccttccccacttccccggcctctatgaatgtgctctccca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cccctccagaaacccctatcccttccccacttccccggcctctatgaatgtgctctccca 804

                                                                       
Query: 605 ctgaacgacccactcccaccatccctccctagcattctcctacactggggcattgaacct 664
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 805 ctgaacgacccactcccaccatccgtccctagcattctcctacactggggcattgaacct 864

                                                    
Query: 665 acacaggaccaagagtctctcctcccattgattcccaataa 705
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 acacaggaccaagagtctctcctcccattgattcccaataa 905


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space:   761025
Effective search space used:   761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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