Query= MSMg01no530_i09.b1 MSMg01no530_i09.b1 CHROMAT_FILE:
MSMg01no530_i09.b1 PHD_FILE: MSMg01no530_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:52 2005
(717 letters)
>mm_chr19_24330167_24331280
Length = 1114
Score = 1348 bits (697), Expect = 0.0
Identities = 708/713 (99%), Gaps = 3/713 (0%)
Strand = Plus / Minus
Query: 5 gaattcactcctatcctacacctttgggtacagaatttagcattataatacatagcaaca 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 gaattcactcctatcctagacctttgggtacagaatttagcattataatacatagcaaca 793
Query: 65 gaccaaacctcaacaggtttgacttaactagtgatggtactggagtagacactgaggcct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gaccaaacctcaacaggtttgacttaactagtgatggtactggagtagacactgaggcct 733
Query: 125 tgattaagggcatggaatgtgtacaggtacttacattatttttgatattgtttttcttca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 tgattaagggcatggaatgtgtacaggtacttacattatttttgatattgtttttcttca 673
Query: 185 ttcccaggaacttaatttagggtgtcacacattctaggtaaacctacctctgagctatac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ttcccaggaacttaatttagggtgtcacacattctaggtaaacctacctctgagctatac 613
Query: 245 tttcagtccagcctgcatctgctaaagacaaaatgtaaaacccaatgtcccatctcccct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tttcagtccagcctgcatctgctaaagacaaaatgtaaaacccaatgtcccatctcccct 553
Query: 305 gatcgtgttgatgaagaaatagaatgtacacgaataggtttattgaactgtttattagaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gatcgtgttgatgaagaaatagaatgtacacgaataggtttattgaactgtttattagaa 493
Query: 365 tgttgagaaaaacacccatacccactggcaacattgcctcccaaggactccttcctatct 424
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 492 tgttgagaaaaacacccatacccactggcgacattgcctcccaaggactccttcctatct 433
Query: 425 aagagaagagtcaggcataggaggccactgtaagcacaaaacttagtttacaccaggcct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aagagaagagtcaggcataggaggccactgtaagcacaaaacttagtttacaccaggcct 373
Query: 485 ttgcagaccactggagtctctatgctctgccttggcatttggaagcccacttgatgttgt 544
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 372 ttgcagaccactggagtctctatgctctgccttggcatttggaagcccacttga---tgt 316
Query: 545 tgttactgtttatctctttcaaaagaatgtgtttgaagctggacagtggtgattcctgcc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tgttactgtttatctctttcaaaagaatgtgtttgaagctggacagtggtgattcctgcc 256
Query: 605 tttaatcccagagctcaggagacaggtaggcagatctcttgagttccaggccaccctggt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tttaatcccagagctcaggagacaggtaggcagatctcttgagttccaggccaccctggt 196
Query: 665 ctacagagtgagtttcaggatagccaaggctacacagagaaaccctgtcttga 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ctacagagtgagtttcaggatagccaaggctacacagagaaaccctgtcttga 143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1114
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1104
Effective search space: 780528
Effective search space used: 780528
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no530_i09.g1 MSMg01no530_i09.g1 CHROMAT_FILE:
MSMg01no530_i09.g1 PHD_FILE: MSMg01no530_i09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:52 2005
(630 letters)
>mm_chr19_24280664_24281693
Length = 1030
Score = 1081 bits (559), Expect = 0.0
Identities = 610/627 (97%), Gaps = 2/627 (0%)
Strand = Plus / Plus
Query: 1 attacattacatttgtggtcttgtttttgtttttaagttttagtttgtatgttcgtttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacattacatttgtggtcttgtttttgtttttaagttttagtttgtatgttcgtttgt 260
Query: 61 ttgttgaaatagggtcatgctatgtagcccaggctgacctagaattcagtatgtagccca 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ttgttgaaatagggtcatgctatgtagcccaggctgacctagaattcggtatgtagccca 320
Query: 121 ggctagcttccaaatccaggtaatcctcctgccttagcttcataagtgctggaattacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggctagcttccaaatccaggtaatcctcctgccttagcttcataagtgctggaattacag 380
Query: 181 gtatccatcaatagatatttaaaatgtaaaatatctctcaccccaaaaaaactttaagat 240
|||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 gtatccgtcaatagctatttaaaatgtaaaatatctctcacccc-aaaaaactttaagat 439
Query: 241 caagatgttcaagttttctctccagaagattaaacctgaatgtagaggctggagagatgg 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caagatgtttaagttttctctccagaagattaaacctgaatgtagaggctggagagatgg 499
Query: 301 ctcagcaattatgagtctttgctgcacttctagaggacatgaatttggttctcagcaccc 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 500 ctcagcaattatgagtctttgctgctcttctagaggacatgaatttggttctcagcaccc 559
Query: 361 atgtctacctgtggccccagtgccctcctcgggcatccaagggcaactgcgcaatatgca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgtctacctgtggccccagtgccctcctcgggcatccaagggcaactgcgcaatatgca 619
Query: 421 gcatgtacttgcacacaactacaaacatacacataaataaaaataaatttaaaaaaaaa- 479
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 620 gcatgtacttgcacacaactacaaacatacacataaataaaaataaattaaaaaaaaaaa 679
Query: 480 cggaatatacaaaatccacacatcagccaacagacacaggagcatggctgtatgtatatc 539
|| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 680 cgtaatatacaaaatccacacatcagccaacagacataggagtatggctgtatgtatatc 739
Query: 540 ttcaacagctaggaggcagagacagaggaacccctgaaagttctaggcctgcacagtcca 599
| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
Sbjct: 740 tccaacagctaggaggcagagacagaggaatccctgaaagttctaggcctgcgcagtcga 799
Query: 600 tccggtgactgccagaccaagctggga 626
||||||||||| |||||||||| ||||
Sbjct: 800 tccggtgactgtcagaccaagccggga 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space: 632400
Effective search space used: 632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
