Query= MSMg01no530_j03.b1 MSMg01no530_j03.b1 CHROMAT_FILE:
MSMg01no530_j03.b1 PHD_FILE: MSMg01no530_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:56 2005
(561 letters)
>mm_chr19_53562842_53563802
Length = 961
Score = 1033 bits (534), Expect = 0.0
Identities = 552/558 (98%)
Strand = Plus / Plus
Query: 4 ggaattctgcattttgcccagcagcctcacccagactagaccctaggagggaggcagcca 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgcattttgcccagcagcctcacccagactagaccctaggagggaggcagcca 263
Query: 64 gctatcccagaggacagagatgtctcctccacccgccactgcttggtttgcttcaaccag 123
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 264 gctatcccagaggacagagatgtctcctccacctgccactgcttggtttgcttcaaccag 323
Query: 124 aggctggtgagaatctgccattgcccaattccctggcaagctgtagccctcttcagacac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggctggtgagaatctgccattgcccaattccctggcaagctgtagccctcttcagacac 383
Query: 184 tggccctggcactggagtcataacatctttggagaagtgttgcatctaattaacctaata 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tggccctggcactggagtcataacatctttggagaagtgttgcatctaattaacctaata 443
Query: 244 agtaggttgtaggctctgaccggaagctgcagaggattcaccctgacagatgggcaggag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtaggttgtaggctctgaccggaagctgcagaggattcaccctgacagatgggcaggag 503
Query: 304 tgggtcacacctgcttcaggcacctgccaacaaaccactgctgtagcccgtgggagagct 363
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 504 cgggtcacacctgcttcaggcacctgccaacaaaccactgctgtagcccgcgggagagct 563
Query: 364 aatagggtgcttcggttacacaccagatacatgacaaacagaagtcacaccagcatcgta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aatagggtgcttcggttacacaccagatacatgacaaacagaagtcacaccagcatcgta 623
Query: 424 ctagcagcataatggctgttatgaaacccgtggtatacagcaagcactgagctagcatta 483
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctagcagcgtaatggctgttatgaaacccgtggtatacagcaagcactgagctagcatta 683
Query: 484 tctcatttaacccctataaccttcccatctggcagaagctaatattatccccatttaaca 543
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 684 tctcatttaacccctataaccatcccatctggcagaagctactattatccccatttaaca 743
Query: 544 catgacaaaactgaggcc 561
||||||||||||||||||
Sbjct: 744 catgacaaaactgaggcc 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no530_j03.g1 MSMg01no530_j03.g1 CHROMAT_FILE:
MSMg01no530_j03.g1 PHD_FILE: MSMg01no530_j03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:06:56 2005
(601 letters)
>mm_chr19_53744216_53745216
Length = 1001
Score = 646 bits (334), Expect = 0.0
Identities = 376/394 (95%), Gaps = 7/394 (1%)
Strand = Plus / Minus
Query: 1 acagagcttggggcctgcttctgctccttgctatctagttaccaacagcatcttacccag 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 394 acagagcttggggcctgcttctgctccttgctatctagctaccaacagcatcttacccag 335
Query: 61 actctcagtacttctcggctttcctcctgcgctgtggctcaggatcacctcacagtgcac 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 334 actctcagtacttctcggctttcctccggcgctgtggctcaggatcacctcacagtgcac 275
Query: 121 gtggctgtggtaatgatgttctgtttgctctcacatcatcctgcagccagcaaggccaca 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 274 gtggctgtggtaatgatgttctgtttgctcgcacatcatcctgcagccagcaaggccaca 215
Query: 181 gcaggagagcaaag-------ctctggggttccctttgctttcggggtgggggacgactc 233
|||||||||||||| ||||||||| |||||||||||||||||||||||| ||||
Sbjct: 214 gcaggagagcaaagggtgaaactctggggtcccctttgctttcggggtgggggacaactc 155
Query: 234 agagcggggagctcctacttctagggctgtttccttgagaaattttatttcaggtggtgc 293
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 154 agagcagggagctcctacttccagggctgtttccttgagaaattttatttcaggtggcgc 95
Query: 294 atgcctttgattccagcactcagggaacagaggcaggtgttatctctgtgagttcaaatg 353
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 94 atgcctttgaccccagcactcagggaacagaggcaggtgttatctctgtgagttcaaatg 35
Query: 354 aaactcaactaaaacccaagagaggatctggaat 387
|||||||||||||||||| |||||||||||||||
Sbjct: 34 aaactcaactaaaacccaggagaggatctggaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
