Query= MSMg01no531_a13.b1 MSMg01no531_a13.b1 CHROMAT_FILE:
MSMg01no531_a13.b1 PHD_FILE: MSMg01no531_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:33 2005
(433 letters)
>mm_chr19_37880719_37881550
Length = 832
Score = 803 bits (415), Expect = 0.0
Identities = 428/433 (98%), Gaps = 3/433 (0%)
Strand = Plus / Plus
Query: 1 gcacagaagctgacttatttttttattttccttttttctttttagtattaattttttttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gcacagaagctgacttatttttttattttccttttttctttttagtattaattttttttt 262
Query: 61 ttctccttcaagcctagccagagacctcccggaggtccaaacccaagccaggctcgatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 --ctccttcaagcctagccagagacctcccggaggtccaaacccaagccaggctcgatct 320
Query: 121 gttttaattcaaccactgtagatttatggcttagcaaaaaaatgtctgagactttttttt 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttttaattcaaccactgttgatttatggcttagcaaaaaaatgtctgagactttttttt 380
Query: 181 ttttaagcttcatttgttttctaaccttaattctcacaactcaaacacaggtgaaagggc 240
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 ttt-aagcttcatttgttttctaaccttaactctcacaactcaaacacaggtgaaagggc 439
Query: 241 tcagacaaagccactcaggtgtagacgtgagccctgaaagctccatatctcatattcctt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcagacaaagccactcaggtgtagacgtgagccctgaaagctccatatctcatattcctt 499
Query: 301 cgtgaggaatcccacgaagattcgtagacaagtgagagcagacgtacgggagactgtggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cgtgaggaatcccacgaagattcgtagacaagtgagagcagacgtacgggagactgtggg 559
Query: 361 tatcacacagtaaatgcctctgtttggtccccttagaatcgaatacattcagaacagagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tatcacacagtaaatgcctctgtttggtccccttagaatcgaatacattcagaacagagt 619
Query: 421 ttagaatgaaatc 433
|||||||||||||
Sbjct: 620 ttagaatgaaatc 632
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 832
Length adjustment: 9
Effective length of query: 424
Effective length of database: 823
Effective search space: 348952
Effective search space used: 348952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no531_a13.g1 MSMg01no531_a13.g1 CHROMAT_FILE:
MSMg01no531_a13.g1 PHD_FILE: MSMg01no531_a13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:33 2005
(647 letters)
>mm_chr19_38047367_38048413
Length = 1047
Score = 1046 bits (541), Expect = 0.0
Identities = 586/601 (97%)
Strand = Plus / Minus
Query: 43 cattcatagaatgttcttgttggatggagtgttcaactgacaaccctcatccctctgagg 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 cattcatagaatgttcttgttggatggagtgttcaactgacaaccctcatccctctgagg 988
Query: 103 aaggggcatgaacaggtgtcatcctcatctccatgataacgctgtggggcagggaccgat 162
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 987 aaggggcatgaacaggtgtcatcctcatctccatggtaacgctgtggggcagggactgat 928
Query: 163 cagggcttcactttacagtaaggactttgaggctcagaggggccaggtagcttgtccata 222
|| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 927 cacagcttcactttacagtaaggactttgaggctcagaggggcctggtagcttgcccata 868
Query: 223 aacacttggtgattacagacccagctgggatcacatacttcatggaaaccccatacttct 282
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 867 aacacttggtgattacagacccagctgggctcacatacttcatggaaaccccatatttct 808
Query: 283 ccattggtcaaatgcatcagactttcacattagggcgacatgctaggtagaggagagact 342
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 807 ccattggtcaaatgcatccgactttcacgttagggcgacatgctaggtagaggagagact 748
Query: 343 cttgttttgtgactacctcacaactaagagctgcagctgaggtctgaggacaaaatatcc 402
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 747 cttgttttgtgattacctcacaactaagagctgcagctgaggtctgaggacaaaatgtcc 688
Query: 403 ccttctttaatgtaaaagtttcaaggcattggggatccccaggtcatctacagcaagaga 462
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 687 ccttctttaatgtaaaagtttcaaggcattggggatccccaggtaatctacagcaagaga 628
Query: 463 ttccagggccccagggacccttcggagtatggatttagccctcgttcaatggctttagta 522
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 627 ttccagggccccagggacccttcggagtatggatttagccctcgtttaatggctttagta 568
Query: 523 tccactctggcctattgactctagagctggatgtctgctggtcgagccactacagcatca 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tccactctggcctattgactctagagctggatgtctgctggtcgagccactacagcatca 508
Query: 583 cctgtggtctctatgaatgtgggcattcctgccctttgctgcccccttcaaggtatgtgt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 507 cctgtggtctctatgaatgtgggcattcctgccctttgctgcccccttcaaggcatgtgt 448
Query: 643 g 643
|
Sbjct: 447 g 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
