BAC Information

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BAC

Clone NameMSMg01-531O09
Chromosome19 (Build37)
Map Location 12,942,780 - 12,943,259
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1419, EG622845, EG666985, Olfr1420, AV312086, Osbp, GA_x5J8B7W6KF8-6942124-6941700, Olfr1422-ps1, Olfr1423, Olfr1424, Olfr1425, Olfr1426, Olfr1427, Olfr1428, Olfr76, Olfr1555-ps1, Olfr1430-ps1, Olfr1431, Olfr1429-ps1, Olfr262, Olfr232, Olfr1433, Olfr1435-ps1, Olfr1436, Olfr1437, Olfr1438-ps1, Olfr1439-ps1, Olfr1440, Olfr1441, Pfpl, Mpeg1, Dtx4, EG625046, 4632417K18Rik, EG240549, Glyat, Olfr1442, Olfr1443, Keg1, Zfp91, Cntf, Lpxn, EG383436, Olfr1444
Downstream geneOlfr1445, Olfr1446, Olfr1447, EG433224, Olfr1448, Olfr1449, Olfr1450, Olfr1451, Olfr1452-ps1, Olfr1453, Olfr1454, Olfr1455-ps1, Olfr1456-ps1, Olfr1457, EG667271, Olfr1459, Olfr1460-ps1, Olfr1461, Olfr1462, Olfr1463, LOC667300, Olfr1465, Olfr1466, Olfr1467, Olfr1468-ps1, Olfr1469, Olfr1470-ps1, Olfr1471, GA_x5J8B7W6KF8-5605544-5605301, Olfr1472, Olfr1473-ps1, Olfr1474, Olfr1475, GA_x5J8B7W6KF8-5563315-5562883, Olfr1477, GA_x5J8B7W6KF8-5546505-5545716, GA_x5J8B7W6KF8-5539992-5539494, LOC100041185, Olfr1480, GA_x5J8B7W6KF8-5515896-5515561, GA_x5J8B7W6KF8-5488050-5488655, Olfr1483-ps1, Olfr1484, GA_x5J8B7W6KF8-5463415-5462623, Olfr1486-ps1, LOC671653, Olfr1487, GA_x5J8B7W6KF8-5425983-5425664, Olfr1489, Olfr1490, Olfr1491, Olfr1492-ps1, Olfr1493-ps1, Olfr1494, Olfr1495, Olfr1496, Olfr1497, Olfr1498-ps1, Olfr1499, Olfr1500, Olfr1501, Olfr1502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-531O09.T7 (MSMg01no531_o09.b1)MSMg01-531O09.TJ (MSMg01no531_o09.g1)
ACCAG600187AG600188
length751741
length of high quality
(start - end)		594 (48 - 641)619 (80 - 698)
definitionCHROMAT_FILE: MSMg01no531_o09.b1 PHD_FILE: MSMg01no531_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:41 2005CHROMAT_FILE: MSMg01no531_o09.g1 PHD_FILE: MSMg01no531_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:08:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTAACTGGCCCTGGGCTATTTTGCTTGGCAGATTTTAATTACTTTT
TCTATTTCACTTGGGGCTATGAGTCTGTTCAAATTGCTTATTTGATTTTA
ATTTAACTTTGGTAGGTCCTATACATCAAGAAATTTATCCATTTCTTTTA
CGTTTTCTAGTTTGCTGAAGTATAGGTTTTTAACGTATGTCCTTATGAAT
CTGTGGATTTCCTCAGTATGTCCTGTAATGTTTCCCTTTTTATTTCTAAT
TGTTTTAACTTAGATTTCTCTCTCCATTTTTTAGTAAACTTGGGTAAGTG
TTTGTCAGTATTAATGATTTTCTCAAGGAATAAACTCTTTGTTCCATTGA
TACAAATTGCATTTTGTTTGTTTTTCTATCTCATCGATTTCAGCCCAGAA
ATTGAGTATTTTTCCATCTACTTTTTTGGAGTTATTTCTTCTGATTCTAG
AGATTTTAGGCATATATTTTAGTCACTAATAGGAGATATTTCCTAATTTC
TTATATAGCCTCTTACTTCTATGGCCTTGCCTCTTAGAACTACTCTCAGT
GTATTCTATAGGTTTGGTATGCTGCATTTTTATTTTCATTCAGTTCTAAA
AAATCATTTTAGTTTCCTTCTTTATTTCTGCTATGATCCATTATTTTCCA
GTCAGTAGTAAACTGTTCACTGACAATGAGTTTGTAAGCTTTCTGTTGTT
N

NNCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATATATATTGGATATTAG
TCCCCTATCTGGTTTAGAATAGGTAAAGATCCTTTCCCACTCTGTTGGTG
GCCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAAT
TTTATGAGGTCCCATTTATCGATTCTCAATCTTACAGCACAAGCCATTGC
TGTTCTATTCAGGAATTTTTCCGCTGTACCCATATCTTCGAGGCTTTTCC
CTACTTTACAGAAGAGTTTAAATGAAAGAAAAAATAATTTTCTAATTATG
ATAATTGTGTCATTAATATTATTTATAAAAGTTTTGTAAGCAGGTTGTGT
GGATCTGGAGAGTCTGTGACTGAAATTCTAGTTGCAAGTTGTCAAGAAAT
TCTCAGGCTTTTGTTTTCCATTTCCTACACAGAGTTCACACACAAAGGGA
ACATTTTAAAATATGTACTCATTAATATTATATTATATTAATATAGATAT
ATATATAGATGTAGATTAGATATAGATGATAGAGATAGAGATATAACCAC
ATAAATGCATGTACATATGAATGTAAACATGAATTCATTCAAATCCTTTC
AGGAACAAAAAGAGGTTGTCGGATGTCCTGGAACTAAAGTTACAGGTGAT
TGTCAGCTGTCTAATATGGGACTGGAAACCACACCTAGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no531_o09.g1 MSMg01no531_o09.g1 CHROMAT_FILE:
MSMg01no531_o09.g1 PHD_FILE: MSMg01no531_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:08:41 2005
         (619 letters)



>mm_chr19_12942622_12943645
          Length = 1024

 Score =  480 bits (248), Expect = e-139
 Identities = 382/480 (79%), Gaps = 87/480 (18%)
 Strand = Plus / Minus

                                                                       
Query: 227 ttacagaagagtttaaatgaaagaaaaaataat----tttctaattatgataattgtgtc 282
           |||||||| | |||||||||||||||||| |||    |||||||||||||||||||| ||
Sbjct: 638 ttacagaaaaatttaaatgaaagaaaaaagaattttctttctaattatgataattgtatc 579

                                                                       
Query: 283 attaatattatttataaaagttttgtaagcaggttgtgtggatctggagagtctgtgact 342
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 578 attaatattatttataaaagttttgtaagcaggttgtgtggatctggagagtctatgact 519

                                                                       
Query: 343 gaaattctagttgcaagttgtcaagaaattctcaggcttttg-ttttccatttcctacac 401
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 518 gaaattctagttgcaagttgtcaagaaattctcaggcttttgtttttccatttcctacac 459

                                                                       
Query: 402 agagttcacacacaaagggaacattttaaaatatgtactc----------------atta 445
           ||||||||||||||||||||||| ||||||||||||||||                ||||
Sbjct: 458 agagttcacacacaaagggaacactttaaaatatgtactcatttatattatattatatta 399

                                                                       
Query: 446 ----atattatattatatta----atatagatatatata----tagatgtagattagata 493
               ||||||||||||||||    |||||||||||||||    |||||||||||||||||
Sbjct: 398 tattatattatattatattatattatatagatatatatagatgtagatgtagattagata 339

                                                                       
Query: 494 tagat------------------------------------------------------g 499
           |||||                                                      |
Sbjct: 338 tagatgatagagatagagatagagatagagatagagatagagatagagatagagatagag 279

                                                                       
Query: 500 atagagatagagatataaccacataaatgcatgtacatatgaatgtaaacatgaattcat 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 atagagatagagatataaccacataaatgcatgtacatatgaatgtaaacatgaattcat 219

                                                                       
Query: 560 tcaaatcctttcaggaacaaaaagaggttgtcggatgtcctggaactaaagttacaggtg 619
           |||||| ||||| || |||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 218 tcaaatgctttcggggacaaaaagaggttgtcagatgtcctggaactgaagttacaggtg 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1024
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1014
Effective search space:   617526
Effective search space used:   617526
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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